Merge branch 'master' into development

README.md

@@ -1,10 +1,10 @@
 Master status: [![Master Build Status](https://travis-ci.org/rhiever/tpot.svg?branch=master)](https://travis-ci.org/rhiever/tpot)
 [![Master Code Health](https://landscape.io/github/rhiever/tpot/master/landscape.svg?style=flat)](https://landscape.io/github/rhiever/tpot/master)
-[![Master Coverage Status](https://coveralls.io/repos/rhiever/tpot/badge.svg?branch=master&service=github)](https://coveralls.io/github/rhiever/tpot?branch=master)
+[![Master Coverage Status](https://coveralls.io/repos/github/rhiever/tpot/badge.svg?branch=master)](https://coveralls.io/github/rhiever/tpot?branch=master)
 
 Development status: [![Development Build Status](https://travis-ci.org/rhiever/tpot.svg?branch=development)](https://travis-ci.org/rhiever/tpot/branches)
 [![Development Code Health](https://landscape.io/github/rhiever/tpot/development/landscape.svg?style=flat)](https://landscape.io/github/rhiever/tpot/development)
-[![Development Coverage Status](https://coveralls.io/repos/rhiever/tpot/badge.svg?branch=development&service=github)](https://coveralls.io/github/rhiever/tpot?branch=development)
+[![Development Coverage Status](https://coveralls.io/repos/github/rhiever/tpot/badge.svg?branch=development)](https://coveralls.io/github/rhiever/tpot?branch=development)
 
 Package information: [![Python 2.7](https://img.shields.io/badge/python-2.7-blue.svg)](https://www.python.org/download/releases/2.7/)
 [![Python 3.6](https://img.shields.io/badge/python-3.6-blue.svg)](https://www.python.org/downloads/release/python-360/)

docs/api/index.html

@@ -206,7 +206,7 @@ <h1 id="classification">Classification</h1>
 'accuracy', 'adjusted_rand_score', 'average_precision', 'balanced_accuracy', 'f1', 'f1_macro', 'f1_micro', 'f1_samples', 'f1_weighted', 'neg_log_loss','precision',
 'precision_macro', 'precision_micro', 'precision_samples', 'precision_weighted', 'recall', 'recall_macro', 'recall_micro', 'recall_samples', 'recall_weighted', 'roc_auc'
 <br /><br/>
-If you would like to use a custom scoring function, you can pass a callable function to this parameter with the signature <em>scorer(y_true, y_pred)</em>. See the section on <a href="/using/#scoring-functions">scoring functions</a> for more details.
+If you would like to use a custom scoring function, you can pass a callable function to this parameter with the signature <em>scorer(y_true, y_pred)</em>. See the section on <a href="../using/#scoring-functions">scoring functions</a> for more details.
 <br /><br />
 TPOT assumes that any function with "error" or "loss" in the function name is meant to be minimized, whereas any other functions will be maximized.
 </blockquote>
@@ -268,7 +268,7 @@ <h1 id="classification">Classification</h1>
 <li>string 'TPOT MDR', TPOT will use a built-in configuration specialized for genomic studies, or</li>
 <li>None, TPOT will use the default TPOTClassifier configuration.</li>
 </ul>
-See the <a href="/using/#built-in-tpot-configurations">built-in configurations</a> section for the list of configurations included with TPOT, and the <a href="/using/#customizing-tpots-operators-and-parameters">custom configuration</a> section for more information and examples of how to create your own TPOT configurations.
+See the <a href="../using/#built-in-tpot-configurations">built-in configurations</a> section for the list of configurations included with TPOT, and the <a href="../using/#customizing-tpots-operators-and-parameters">custom configuration</a> section for more information and examples of how to create your own TPOT configurations.
 </blockquote>
 
 <strong>warm_start</strong>: boolean, optional (default=False)
@@ -527,7 +527,7 @@ <h1 id="classification">Classification</h1>
 <div style="padding-left:5%" width="100%">
 Export the optimized pipeline as Python code.
 <br /><br />
-See the <a href="/using/#tpot-with-code">usage documentation</a> for example usage of the export function.
+See the <a href="../using/#tpot-with-code">usage documentation</a> for example usage of the export function.
 <br /><br />
 <table width="100%">
 <tr>
@@ -618,7 +618,7 @@ <h1 id="regression">Regression</h1>
 <br /><br/>
 Note that we recommend using the <em>neg</em> version of mean squared error and related metrics so TPOT will minimize (instead of maximize) the metric.
 <br /><br/>
-If you would like to use a custom scoring function, you can pass a callable function to this parameter with the signature <em>scorer(y_true, y_pred)</em>. See the section on <a href="/using/#scoring-functions">scoring functions</a> for more details.
+If you would like to use a custom scoring function, you can pass a callable function to this parameter with the signature <em>scorer(y_true, y_pred)</em>. See the section on <a href="../using/#scoring-functions">scoring functions</a> for more details.
 <br /><br />
 TPOT assumes that any custom scoring function with "error" or "loss" in the function name is meant to be minimized, whereas any other functions will be maximized.
 </blockquote>
@@ -681,7 +681,7 @@ <h1 id="regression">Regression</h1>
 <li>string 'TPOT MDR', TPOT will use a built-in configuration specialized for genomic studies, or</li>
 <li>None, TPOT will use the default TPOTRegressor configuration.</li>
 </ul>
-See the <a href="/using/#built-in-tpot-configurations">built-in configurations</a> section for the list of configurations included with TPOT, and the <a href="/using/#customizing-tpots-operators-and-parameters">custom configuration</a> section for more information and examples of how to create your own TPOT configurations.
+See the <a href="../using/#built-in-tpot-configurations">built-in configurations</a> section for the list of configurations included with TPOT, and the <a href="../using/#customizing-tpots-operators-and-parameters">custom configuration</a> section for more information and examples of how to create your own TPOT configurations.
 </blockquote>
 
 <strong>warm_start</strong>: boolean, optional (default=False)
@@ -904,7 +904,7 @@ <h1 id="regression">Regression</h1>
 <div style="padding-left:5%" width="100%">
 Export the optimized pipeline as Python code.
 <br /><br />
-See the <a href="/using/#tpot-with-code">usage documentation</a> for example usage of the export function.
+See the <a href="../using/#tpot-with-code">usage documentation</a> for example usage of the export function.
 <br /><br />
 <table width="100%">
 <tr>

docs/index.html

@@ -205,5 +205,5 @@
 
 <!--
 MkDocs version : 0.16.3
-Build Date UTC : 2017-06-01 21:31:40
+Build Date UTC : 2017-06-01 22:09:42
 -->