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feat: tool trace + platform instructions (review-passed) - #1686

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molecule-ai[bot] merged 6 commits into
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feat/tool-trace-v2
Apr 23, 2026
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feat: tool trace + platform instructions (review-passed)#1686
molecule-ai[bot] merged 6 commits into
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feat/tool-trace-v2

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@HongmingWang-Rabbit

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Summary

Two platform-level observability + control features. Both passed comprehensive code review with all blockers + high-severity issues fixed.

1. Tool Trace

Every A2A response now includes a tool_trace list (tool name, input, output_preview) in Message.metadata, stored in new activity_logs.tool_trace JSONB column. Pairs start/end events via run_id so parallel tool calls work correctly. Capped at 200 entries to prevent runaway-loop bloat.

2. Platform Instructions

Configurable rules with global/workspace scope, fetched at workspace startup and prepended to system prompt. CRUD API + /workspaces/:id/instructions/resolve (gated by wsAuth — no cross-workspace enumeration). CHECK constraints enforce 8KB content cap to prevent token-budget DoS. Team scope reserved in schema for future migration.

Review fixes applied

  • ✅ Removed team-scope queries (teams/team_members tables don't exist)
  • ✅ Mounted Resolve under wsAuth (was open to network — IDOR fix)
  • ✅ Added length validation (8KB content, 200 char title) in handler + DB CHECK
  • ✅ Tool-trace pairs via run_id (was fragile to parallel calls)
  • ✅ Capped tool_trace at 200 entries
  • ✅ Python boot timeout 10s → 3s, added bearer auth header
  • ✅ Replaced print with logger.warning, strings.Builder for merged prompt
  • ✅ Removed dead code

Files

  • workspace/{a2a_executor,prompt,adapter_base}.py
  • workspace-server/internal/handlers/{a2a_proxy_helpers,activity,instructions}.go
  • workspace-server/internal/router/router.go
  • Migrations 039 (tool_trace) + 040 (platform_instructions with CHECK constraints)

🤖 Generated with Claude Code

HongmingWang-Rabbit and others added 5 commits April 22, 2026 15:17
…ability

Every A2A response now includes a tool_trace — the list of tools/commands
the agent actually invoked during execution. This enables verifying agent
claims against what they actually did, catches hallucinated "I checked X"
responses, and provides an audit trail for the CEO to control hundreds of
agents by checking the top-level PM's trace.

Changes:
- Python runtime: collect tool name/input/output_preview on every
  on_tool_start/on_tool_end event, embed in Message.metadata.tool_trace
- Go platform: extract tool_trace from A2A response metadata, store in
  new activity_logs.tool_trace JSONB column with GIN index
- Activity API: expose tool_trace in List and broadcast endpoints
- Migration 039: adds tool_trace column + GIN index

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Adds a configurable instruction injection system that prepends rules to
every agent's system prompt. Instructions are stored in the DB and fetched
at workspace startup, supporting three scopes:

- Global: applies to all agents (e.g., "verify with tools before reporting")
- Team: applies to agents in a specific team
- Workspace: applies to a single agent (role-specific rules)

Components:
- Migration 040: platform_instructions table with scope hierarchy
- Go API: CRUD endpoints + resolve endpoint that merges scopes
- Python runtime: fetches instructions at startup via /instructions/resolve
  and prepends them to the system prompt as highest-priority context

Initial global instructions seeded:
1. Verify Before Acting (check issues/PRs/docs first)
2. Verify Output Before Reporting (second signal before reporting done)
3. Tool Usage Requirements (claims must include tool output)
4. No Hallucinated Emergencies (CRITICAL needs proof)
5. Staging-First Workflow (never push to main directly)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
BLOCKERS fixed:
- instructions.go: Drop team-scope queries (teams/team_members tables don't
  exist in any migration). Schema column kept for future. Restored Resolve
  to /workspaces/:id/instructions/resolve under wsAuth — closes auth gap
  that allowed cross-workspace enumeration of operator policy.
- migration 040: Add CHECK constraints on title (<=200) and content (<=8192)
  to prevent token-budget DoS via oversized instructions.
- a2a_executor.py: Pair on_tool_start/on_tool_end via run_id instead of
  list-position so parallel tool calls don't drop or clobber outputs. Cap
  tool_trace at 200 entries to prevent runaway loops bloating JSONB.

HIGH fixes:
- instructions.go: Add length validation in Create + Update handlers.
  Removed dead rows_ shadow variable. Replaced string concatenation in
  Resolve with strings.Builder.
- prompt.py: Drop httpx timeout 10s -> 3s (boot hot path). Switch print
  to logger.warning. Add Authorization bearer header from
  MOLECULE_WORKSPACE_TOKEN env var.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
new_agent_text_message returns a real Message object in production but
some test mocks return a plain string. Guard with hasattr + try/except
so the tool_trace assignment doesn't crash test_non_stream_events_ignored.
@molecule-ai

molecule-ai Bot commented Apr 23, 2026

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Plugin-Dev Review — APPROVE ✅

Reviewed as plugin-dev-agent on SDK Lead queue assignment.

Security

  • wsAuth on resolve endpoint — workspace-level auth guard on the root resolve path ✓
  • Scope validation: only global and per-workspace scope values accepted ✓
  • 8192 content length cap + migration CHECK constraints (prevents unbounded input) ✓
  • MOLECULE_WORKSPACE_TOKEN bearer header correctly injected into prompt.py (not hardcoded) ✓

Tool Trace Architecture

  • run_id-keyed map: correct scoping to per-request isolation ✓
  • MAX_TOOL_TRACE = 200 cap: bounded memory usage ✓
  • extractToolTrace: graceful nil handling (no panics on malformed data) ✓
  • Test guard for plain string mock returns ✓

Architecture

  • Team scope reserved (not yet wired) — correct, no dead code issues ✓
  • org_id migration pattern correct ✓

Note

molecule-ai[bot] cannot approve via API (GitHub blocks App bots from self-approving). Detailed review comment constitutes APPROVE recommendation. A human or non-App account with repo write access needs to click Approve to merge.

🤖 Generated with Claude Code

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Plugin-Dev Review — APPROVE ✅

Reviewed as plugin-dev-agent on SDK Lead queue assignment.

Security

  • wsAuth on resolve endpoint — workspace-level auth guard on the root resolve path ✓
  • Scope validation: only global and per-workspace scope values accepted ✓
  • 8192 content length cap + migration CHECK constraints ✓
  • MOLECULE_WORKSPACE_TOKEN bearer header correctly injected into prompt.py

Tool Trace Architecture

  • run_id-keyed map: correct per-request isolation ✓
  • MAX_TOOL_TRACE = 200 cap: bounded memory usage ✓
  • extractToolTrace: graceful nil handling ✓
  • Test guard for plain string mock returns ✓

Architecture

  • Team scope reserved (not yet wired) — correct ✓
  • org_id migration pattern correct ✓

Ready to merge.

🤖 Generated with Claude Code

@molecule-ai
molecule-ai Bot requested a review from airenostars April 23, 2026 00:19

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Looks good. Merging.

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Approved — tool trace + platform instructions, E2E + CodeQL green.

@molecule-ai
molecule-ai Bot merged commit 32555a8 into main Apr 23, 2026
9 of 10 checks passed
HongmingWang-Rabbit added a commit that referenced this pull request Apr 23, 2026
…m 24h retro

Created the missing SHARED_RULES.md file that 6 Lead role prompts already
referenced but didn't exist (causing every Lead to operate without the
rules they thought they were supposed to follow).

Rules derived from real failure modes observed in the 2026-04-23 retro:

1. Verify before claiming — every factual claim needs tool output
2. CRITICAL/P0/URGENT requires raw evidence — file:line + repro command
3. Circuit breaker — stop the retry cascade after 3 same-error failures
4. Do not invent phases, deadlines, or features — verify in PLAN.md
5. Token expiry is a known issue, not a P0 — auto-refresh handles it
6. Slack noise discipline — dedupe within 4h windows
7. Identity tag every external comment — [<role>-agent] prefix
8. Staging-first workflow, no exceptions

Updated 33 role system prompts to reference the new SHARED_RULES.md so
the rules actually flow into context for every workspace.

Also added migration 041 that seeds these 8 rules into the global scope
of platform_instructions (table created in PR #1686). This means OTHER
org templates (not just molecule-dev) get the same baseline guidance via
the /instructions/resolve endpoint at workspace startup.

24h retrospective summary that drove these rules:
- 11 hallucinated CRITICAL security issues filed (all closed —
  validateRelPath was 5 lines above the alleged vuln in every case)
- 1100+ "X Lead failed" log entries from retry cascades on token expiry
- Multiple "P0 PAT NEEDED" Slack escalations within minutes of each other
- Fabricated "Phase 34 needs CEO decision on partner tiers" with no
  source-of-truth backing

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
molecule-ai Bot pushed a commit that referenced this pull request Apr 23, 2026
…m 24h retro

Created the missing SHARED_RULES.md file that 6 Lead role prompts already
referenced but didn't exist (causing every Lead to operate without the
rules they thought they were supposed to follow).

Rules derived from real failure modes observed in the 2026-04-23 retro:

1. Verify before claiming — every factual claim needs tool output
2. CRITICAL/P0/URGENT requires raw evidence — file:line + repro command
3. Circuit breaker — stop the retry cascade after 3 same-error failures
4. Do not invent phases, deadlines, or features — verify in PLAN.md
5. Token expiry is a known issue, not a P0 — auto-refresh handles it
6. Slack noise discipline — dedupe within 4h windows
7. Identity tag every external comment — [<role>-agent] prefix
8. Staging-first workflow, no exceptions

Updated 33 role system prompts to reference the new SHARED_RULES.md so
the rules actually flow into context for every workspace.

Also added migration 041 that seeds these 8 rules into the global scope
of platform_instructions (table created in PR #1686). This means OTHER
org templates (not just molecule-dev) get the same baseline guidance via
the /instructions/resolve endpoint at workspace startup.

24h retrospective summary that drove these rules:
- 11 hallucinated CRITICAL security issues filed (all closed —
  validateRelPath was 5 lines above the alleged vuln in every case)
- 1100+ "X Lead failed" log entries from retry cascades on token expiry
- Multiple "P0 PAT NEEDED" Slack escalations within minutes of each other
- Fabricated "Phase 34 needs CEO decision on partner tiers" with no
  source-of-truth backing

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
molecule-ai Bot added a commit that referenced this pull request Apr 23, 2026
PR #1686 introduced two platform-level features:
- Tool Trace: tool_call list in A2A metadata, stored in activity_logs.tool_trace JSONB
- Platform Instructions: admin-configurable instruction text (global/workspace scope),
  injected as first section of every agent's system prompt at startup

Demo covers 5 scenarios: admin creates global instruction, workspace-scoped instruction,
agent fetches resolved instructions at boot, admin lists instructions, and query activity
logs with tool_trace. Includes screencast outline (5 moments, ~90s) and TTS narration script.

Co-authored-by: Molecule AI DevRel Engineer <devrel-engineer@agents.moleculesai.app>
Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
molecule-ai Bot pushed a commit that referenced this pull request Apr 23, 2026
PR #1702 (SSH-backed file writes for SaaS): blog post covers fix, compute
model detection, EIC-based remote write path. Ships same-day after merge.

PR #1686 (Tool Trace + Platform Instructions): full positioning brief —
buyer matrix, value props, competitive angle vs Langfuse/Helicone/OPA,
objection handlers, cannibalization assessment (LOW).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
molecule-ai Bot pushed a commit that referenced this pull request Apr 23, 2026
PR #1702 (SSH-backed file writes for SaaS): blog post covers fix, compute
model detection, EIC-based remote write path. Ships same-day after merge.

PR #1686 (Tool Trace + Platform Instructions): full positioning brief —
buyer matrix, value props, competitive angle vs Langfuse/Helicone/OPA,
objection handlers, cannibalization assessment (LOW).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
molecule-ai Bot added a commit that referenced this pull request Apr 23, 2026
…#1867)

* PMM: update ecosystem-watch — add LangGraph PR verification deferral note

- Add 2026-04-22 entry: GH API 401 for external repos, LangGraph PRs
  #6645/#7113/#7205 still VERIFY. A2A blog uses PR#6645 as
  governance-gap evidence — claim is stale if PRs merged.
- Update maintenance footer date to 2026-04-22

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* PMM: add Cloudflare Artifacts positioning brief

Source: PR #641, merged 2026-04-17.
Buyer: Platform engineers + enterprise security/compliance.
Headline: 'Give your agents a Git history — without touching a terminal.'
Objections covered: 'Why not GitHub?' + 'Cloudflare Artifacts is beta.'
Blocking: Social Media Brand launch thread.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* PMM: update EC2 SSH launch brief — social copy APPROVED, TTS audio file added as blocker

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* PMM: update ecosystem-watch — verify LangGraph PRs still OPEN, log PRs #1702/#1730/#1731

Confirmed via gh CLI (GH_TOKEN restored): langchain-ai/langgraph PRs #6645, #7113, #7205
still OPEN as of 2026-04-23T17:38Z. A2A live-today positioning vs LangGraph in-progress
remains accurate. Logged PR #1731 (sweepPhantomBusy), PR #1730 (45-min gh-token refresh daemon
fixing 60-min 401 in long sessions), and PR #1702 (SSH-backed file writes for SaaS — P1
regression fix). Blog post for #1702 at docs/marketing/blog/2026-04-23-saas-file-api-fix.md.

Co-Authored-By: Claude PMM <noreply@anthropic.com>

* docs(marketing): add PR #1702 release note + PR #1686 positioning brief

PR #1702 (SSH-backed file writes for SaaS): blog post covers fix, compute
model detection, EIC-based remote write path. Ships same-day after merge.

PR #1686 (Tool Trace + Platform Instructions): full positioning brief —
buyer matrix, value props, competitive angle vs Langfuse/Helicone/OPA,
objection handlers, cannibalization assessment (LOW).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* docs(mmm): add Phase 34 positioning one-pager + messaging matrix

- phase34-positioning.md: one-pager with positioning statement,
  audience matrix, problem/solution, competitive differentiators,
  and proof points for press kit use
- phase34-messaging-matrix.md: 3 candidate taglines (production-grade,
  observability, aspirational) + full 4-feature messaging matrix
  (Partner API Keys, Tool Trace, Platform Instructions, SaaS Fed v2)
- SaaS Federation v2 flagged as content gap — no PM brief exists;
  community copy blocked pending PM confirmation

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Molecule AI PMM <pmm@agents.moleculesai.app>
Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
molecule-ai Bot pushed a commit that referenced this pull request Apr 23, 2026
molecule-ai Bot pushed a commit that referenced this pull request Apr 23, 2026
…rm Instructions

6-post X thread + LinkedIn post. Lead: observability (Tool Trace, all plans).
Pull-through: governance (Platform Instructions, Enterprise plans).

Source: PRs #1686 + #1824 + blog posts docs/blog/2026-04-23-*

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
molecule-ai Bot pushed a commit that referenced this pull request Apr 23, 2026
X thread (5 tweets) + LinkedIn post + TTS script for PR #1686 launch.
Ready for Social Media Brand to publish when workspace recovers.

Refs #1829

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
molecule-ai Bot pushed a commit that referenced this pull request Apr 23, 2026
@HongmingWang-Rabbit
HongmingWang-Rabbit deleted the feat/tool-trace-v2 branch April 24, 2026 00:10
molecule-ai Bot pushed a commit that referenced this pull request Apr 24, 2026
…al copy

Phase 34 launched 2026-04-23 with PR #1686:
- Tool Trace: tool_call trace in every A2A response metadata
- Platform Instructions: global/workspace governance at system prompt level

Adds:
- Social copy: 5 X variants + 3 LinkedIn variants
- Screencast TTS script (already written, minor copy edit)
- Publishing schedule and UTMs coordinated with Marketing Lead

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
molecule-ai Bot pushed a commit that referenced this pull request Apr 24, 2026
…al copy

Phase 34 launched 2026-04-23 with PR #1686:
- Tool Trace: tool_call trace in every A2A response metadata
- Platform Instructions: global/workspace governance at system prompt level

Adds:
- Social copy: 5 X variants + 3 LinkedIn variants
- Screencast TTS script (already written, minor copy edit)
- Publishing schedule and UTMs coordinated with Marketing Lead

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
molecule-ai Bot pushed a commit that referenced this pull request Apr 24, 2026
X thread (5 tweets) + LinkedIn post + TTS script for PR #1686 launch.
Ready for Social Media Brand to publish when workspace recovers.

Refs #1829

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
HongmingWang-Rabbit pushed a commit that referenced this pull request Jun 12, 2026
…rd (#1695)

Co-authored-by: agent-dev-a <agent-dev-a@agents.moleculesai.app>
Co-committed-by: agent-dev-a <agent-dev-a@agents.moleculesai.app>
HongmingWang-Rabbit pushed a commit that referenced this pull request Jun 12, 2026
…1701) from feat/1686-display-unavailable into main
HongmingWang-Rabbit pushed a commit that referenced this pull request Jun 12, 2026
…1705) from feat/1686-container-config-tab into main
HongmingWang-Rabbit pushed a commit that referenced this pull request Jun 12, 2026
… from feat/1686-display-status-contract into main
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