CoditT5: Pretraining for Source Code and Natural Language Editing

This repo hosts the code and data for the following ASE 2022 paper:

Title: CoditT5: Pretraining for Source Code and Natural Language Editing

Authors: Jiyang Zhang, Sheena Panthaplackel, Pengyu Nie, Junyi Jessy Li, Milos Gligoric

@inproceedings{ZhangETAL22CoditT5,
  author = {Zhang, Jiyang and Panthaplackel, Sheena and Nie, Pengyu and Li, Junyi Jessy and Gligoric, Milos},
  title = {Codit{T}5: Pretraining for Source Code and Natural Language Editing},
  booktitle = {International Conference on Automated Software Engineering},
  year = {2022},
}

News

Aug 2023

Pretrained CoditT5 model is released on 🤗 ! 🔥 link
Note: It is recommended fine-tuning it before applying to downstream tasks.

Introduction

This repo contains the code and artifacts for reproducing the experiments in CoditT5: Pretraining for Source Code and Natural Language Editing. In this work, we introduce CoditT5 for software edit tasks. CoditT5 is a large Language Model pretrained with a novel objective to explicitly model edits. CoditT5 sets the state-of-the-art for downstream tasks including comment updating, bug fixing and automated code review.

The code includes:

• scripts for synthesizing pretraining data for CoditT5
• scripts for processing data for downstream tasks
• scripts for training and evaluating CoditT5 on three downstream tasks
• scripts for combining CoditT5 and CodeT5 through reranking

The artifacts include:

• dataset used for pretraining CoditT5
• datasets for downstream tasks
• checkpoint for the pretrained CoditT5
• checkpoints for the CoditT5 models fine-tuned for downstream tasks

Table of Contents

1. How to Use
2. Dependency
3. Data Downloads
4. Code for Pretraining
5. Code for Processing Fine-tuning Data
6. Code for Training and Evaluating Models
7. Code for Combining CodeT5 and CoditT5

How to Use

from transformers import T5ForConditionalGeneration, AutoTokenizer

checkpoint = "JiyangZhang/CoditT5"

tokenizer = AutoTokenizer.from_pretrained(checkpoint)
model = T5ForConditionalGeneration.from_pretrained(checkpoint)

code_input = """class HelloWorld { public static void main(String[] args) { System.out.println("Hello, World!")"""

input_ids = tokenizer(code_input, return_tensors="pt").input_ids
generated_ids = model.generate(input_ids, max_length=200)
print(tokenizer.decode(generated_ids[0], skip_special_tokens=True))
# output: <INSERT>; } } ;<INSERT_END> class HelloWorld { public static void main(String[] args) { System.out.println("Hello, World!") ; } } ;

Dependency

Our code require the following hardware and software environments.

• Operating system: Linux (tested on Ubuntu 20.04)
• Minimum disk space: 4 GB
• Python: 3.8
• Anaconda/Miniconda: appropriate versions for Python 3.8 or higher

Additional requirements for training and evaluating ML models:

• GPU: NVIDIA GTX 1080 Ti or better (with >= 11GB memory)
• CUDA: 10.2 or 11.3
• Disk space: 2 GB per trained model

Anaconda or Miniconda is required for installing the other Python library dependencies. Once Anaconda/Miniconda is installed, you can use the following command to setup a virtual environment, named cdt, with the Python library dependencies installed:

cd python/
./prepare_conda_env.sh

And then use conda activate cdt to activate the created virtual environment.

Data Downloads

All our data is hosted on UTBox via a zip file.

Data should be downloaded to this directory with the same directory structure (e.g., data/ from the shared folder should be downloaded as data/ under current directory).

Code for Pretraining

Synthesize Pretraining Data

We provide sample scripts to synthesize the pretraining dataset (by corrupting programming language code snippets and natural language comments) for CoditT5.

First, prepare the programming language and natural language data for pretraining; Then specify the following variables in the function corrupt_pretrain_data() in python/run.sh:

• source_pl_file: the path of data file where each line is a programming language function;
• tokenized_pl_file: the path of tokenized version of source_pl_file;
• corrupt_pl_file: corrupted version of tokenized_pl_file which is the input of pretrained model.
• source_nl_file: the path of data file where each line is a natural language sequence;
• tokenized_nl_file: the path of tokenized version of source_nl_file;
• corrupt_nl_file: corrupted version of tokenized_nl_file which is the input of pretrained model.

cd python/
./run.sh corrupt_pretrain_data

Pretrain CoditT5

Requires the pretrain dataset at data/CoditT5/pretrain/

cd python/
./run.sh pretrain_CoditT5

Code for Processing Fine-tuning Data

We provide the sample script to process the downstream datasets for CoditT5. Requires the raw data files at raw_data/.

cd python/
./run.sh process_coditT5_dataset --dataset ${dataset}

# Example: ./run.sh process_coditT5_dataset --dataset comment-update

Where ${dataset} is the name of the dataset (comment-update, code-review, bf-small, bf-medium). The data files are generated to data/CoditT5/${dataset}/.

Notes:

• CoditT5's input data file name ends with .buggy; CoditT5's target output (edit plan + generation) file name ends with .fixed; target generation file name ends with .seq.
• CoditT5's input is in the form of source_sequence </s> context_sequence; and CoditT5's output is in the form of edit_plan <s> target_sequence
• Raw data files are stored in raw_data/ (we provide some examples for demo), processed data files are generated to data/CoditT5/${dataset}
• Note that for the comment-update dataset, the processed edit_plan is the edits applied to the comment w/o parameter (@return, @param)

Code for Training and Evaluating Models

Train ML models

Requires the dataset at data/${model}/${dataset}/, where ${model} is the name of the model (CodeT5, CoditT5); ${dataset} is the name of the dataset.

cd python/
./run.sh ${model}_train ${dataset}

# Example: ./run.sh CoditT5_train comment-update

Results are generated to models/${model}/${dataset}/, where:

• model/: stores the trained model.

• logs/: stores logs during training.

Evaluate ML models

Requires the dataset at data/${model}/${dataset}/, the trained model at models/${model}/${dataset}/model/.

cd python/
./run.sh ${model}_generate ${dataset}

# Example: ./run.sh CoditT5_generate comment-update

Results are generated to models/${model}/${dataset}/, where:

• output.hyp: the predictions.

Compute automatic metrics

Requires the model's predictions at models/${model}/${dataset}/. Note that the provided script assumes the names for the data files conform the what described in Code for Processing Fine-tuning Data

./run.sh ${model}_eval ${dataset}

# Example: ./run.sh CoditT5_eval comment-update

Results are generated to results/:

• results-${dataset}-${model}.json: the average of automatic metrics.

• scores-${dataset}-${model}.json: the list of automatic metrics per sample.

Code for Combining CodeT5 and CoditT5

Requires the dataset at data/${model}/${dataset}/, the trained models at models/${model}/${dataset}/model/.

Rerank Models' outputs

cd python/
# Rerank CodeT5's outputs with CoditT5
./run.sh CodeT5_rerank ${dataset}
# Rerank CoditT5's outputs with CodeT5
./run.sh CodeT5_rerank ${dataset}

# Example: ./run.sh CoditT5_rerank comment-update

Main results are generated to results/reranks/:

• test-${dataset}-${model}-top-20-rerank-${reranker}-results.json: ${model}'s top 20 beam outputs and ${reranker}'s likelihood score for each beam output.

Compute automatic metrics

Requires the model's reranking results file results/reranks/test-${dataset}-${model}-top-20-rerank-${reranker}-results.json.

./run.sh eval_rerank_${model}_${reranker} ${dataset}

# Example: compute metrics for top 1 CoditT5 prediction reranked by CodeT5
./run.sh eval_rerank_CoditT5_CodeT5 comment-update

Results are generated to results/:

• results-${dataset}-${model}-rerank-${reranker}.json: the average of automatic metrics.

• scores-${dataset}-${model}-rerank-${reranker}.json: the list of automatic metrics per sample.