piyush-el is testing out GitHub Actions 🚀 #2
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| name: Update Pipeline | |
| run-name: ${{ github.actor }} is testing out GitHub Actions 🚀 | |
| on: [push] | |
| jobs: | |
| Update-Pipeline: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!" | |
| - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "💡 The ${{ github.repository }} repository has been cloned to the runner." | |
| - run: echo "🖥️ The workflow is now ready to test your code on the runner." | |
| - name: List files in the repository | |
| run: | | |
| ls ${{ github.workspace }} | |
| - run: pwd | |
| - run: mkdir -p ~/miniconda3 | |
| - run: wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda3/miniconda.sh | |
| - run: bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3 | |
| - run: rm -rf ~/miniconda3/miniconda.sh | |
| - run: ~/miniconda3/bin/conda init bash | |
| - run: conda install -n base -c conda-forge mamba | |
| - run: conda activate base | |
| - run: mamba create -c conda-forge -c bioconda -n snakemake snakemake | |
| - run: conda activate snakemake | |
| - run: snakemake --cores 1 -s Snakefile | |
| - run: echo "This job's status is ${{ job.status }}." |