Fan 2019 ctsm#767

Draft

juliusvira wants to merge 209 commits into

ESCOMP:masterfrom

juliusvira:fan-2019-ctsm

Commits on Mar 15, 2018

FAN_n05_clm4_5_18_r272

jv388
authored and
bjandre
committed

Commits on Mar 16, 2018

Merge remote-tracking branch 'remotes/escomp/release-clm5.0' into fan-clm5
Julius Vira
committed
point externals to fancpl branch
Julius Vira
committed

Commits on Mar 19, 2018

first attempt, not quite working
Julius Vira
committed
add handling of -fan option to CLMBuildNamelist
Julius Vira
committed

Commits on Mar 20, 2018

Merge branch 'master' into fan-clm5-cpl (fix LND_TUNING_MODE)
Julius Vira
committed
FAN NH3 to coupler
Julius Vira
committed
finally correct units for manure nitrogen
Julius Vira
committed
output name NH3_total -> NH3_TOTAL
Julius Vira
committed

Commits on Mar 21, 2018

non-negativity checks tweaked
Julius Vira
committed
manure unit conversion again
Julius Vira
committed
nh->nf
Julius Vira
committed
remove uninitilized fert_to_soil + increase bogus n_stored limit according to the correct unit
Julius Vira
committed

Commits on Mar 22, 2018

Handle size 1 tan pools correctly
Julius Vira
committed
debugging: disarray between crop pheno and ndep, lower wtgcell threshold for skipping
Julius Vira
committed

Commits on Mar 26, 2018

fix zeroing the fluxes
Julius Vira
committed

Commits on Apr 4, 2018

other-fert output
Julius Vira
committed
change to fancpl2 cime
Julius Vira
committed
fanstream attempt 1
Julius Vira
committed
variable fert fractions (2)
Julius Vira
committed

Commits on Jul 9, 2018

mods from the summer 2018 experiments (1)
Julius Vira
committed
drydep mods, clm side
Julius Vira
committed
Merge branch 'drydep-mods' of https://github.com/juliusvira/ctsm into fan-clm5-cpl-poolmods
Julius Vira
committed

Commits on Jul 11, 2018

cleanup
Julius Vira
committed
fix tan_fract + mass check
Julius Vira
committed

Commits on Jul 12, 2018

fix typo
Julius Vira
committed

Commits on Jul 17, 2018

increased housing/storage emissions
Julius Vira
committed
version without drydep mods
Julius Vira
committed

Commits on Jul 20, 2018

output field for manure in barns
Julius Vira
committed
Merge branch 'fan-clm5-cpl-poolmods' into fan-clm5-cpl-poolmods-nodd
Julius Vira
committed

Commits on Aug 14, 2018

changed the flux formulations to what compost.py gives
Julius Vira
committed

Commits on Nov 9, 2018

fix indent
Julius Vira
committed
soilwater tendency for fan
Julius Vira
committed
initialize fan-watertend in coldstart
Julius Vira
committed
using watertend in cnndep (commented out0
Julius Vira
committed

Commits on Dec 3, 2018

tsl tendency unit
Julius Vira
committed

Commits on Jan 2, 2019

fan physics updates + 3-way manure split
Julius Vira
committed

Commits on Jan 3, 2019

3-way manure final
Julius Vira
committed
fert incorp reduction
Julius Vira
committed
remove old FAN flux and state variables
Julius Vira
committed
fertilizer incorporation
Julius Vira
committed
Merge branch 'remove-old-fan' into fan-2019
Julius Vira
committed
fanmod cleanup
Julius Vira
committed

Commits on Jan 4, 2019

bug fix
Julius Vira
committed
bug fix 2
Julius Vira
committed
comments
Julius Vira
committed

Commits on Jan 10, 2019

kads for slurry
Julius Vira
committed
tan fraction, slurry infiltration, inc. reduction
Julius Vira
committed

Commits on Jan 22, 2019

fix conflicts v1
Julius Vira
committed

Commits on Feb 14, 2019

trying to merge but probably need to do it differently
Julius Vira
committed

Commits on Feb 15, 2019

removed old FANv1 fluxes and states
Julius Vira
committed
cleanup
Julius Vira
committed
Merge branch 'master' of https://github.com/ESCOMP/ctsm into fan-2019-merge
Julius Vira
committed
animal housing (open/closed) modifications
Julius Vira
committed
Merge branch 'housingmods' of /glade/u/home/juliusv/fanruns2018/cesm/components/clm into fan-2019-merge-testing
Julius Vira
committed
change cime to point at the fan-enabled version
Julius Vira
committed

Commits on Feb 20, 2019

Avoid referring unallocate array in land-only runs
Julius Vira
committed
Better checking for landunit indices
Julius Vira
committed

Commits on Feb 22, 2019

ndep2dyn_nml renamed to fan_nml and removed ndep3dyn_nml
Julius Vira
committed

Commits on Mar 4, 2019

refractoring with fan2ctsm interface module + preparation for including FAN in N balance check
Julius Vira
committed
Introducing fan pools & fluxes to the soil N balance check
Julius Vira
committed

Commits on Mar 5, 2019

namelist parameters for fan-bgc coupling
Julius Vira
committed
add call to fan_eval
Julius Vira
committed
debug the debug checks
Julius Vira
committed
Merge branch 'fan-bgc-v2' of https://github.com/juliusvira/ctsm into fan-2019-ctsm
Julius Vira
committed
more bgc coupling + initialization
Julius Vira
committed
Merge branch 'n-balance-check' of https://github.com/juliusvira/ctsm into fan-2019-ctsm
Julius Vira
committed

Commits on Mar 6, 2019

FanMod array interfaces, comments, etc
Julius Vira
committed
n-balance check debugged
Julius Vira
committed
FAN namelist setup
Julius Vira
committed
merge array arg mods
Julius Vira
committed

Commits on Mar 8, 2019

debug fan_to_bgc_crop namelist defaults
Julius Vira
committed
10**-ph -> 10**(-ph), etc
Julius Vira
committed

Commits on Mar 12, 2019

more cleanup
Julius Vira
committed

Commits on Mar 13, 2019

housing mods
Julius Vira
committed
slurry infiltration without precip + slurry diffusivity
Julius Vira
committed

Commits on Mar 21, 2019

van der molen liq diffusion + kads = 1
Julius Vira
committed

Commits on Apr 3, 2019

kelvin to c
Julius Vira
committed

Commits on May 6, 2019

more careful checking for column gridcell weight
Julius Vira
committed
more consistent treatment of slurry resistances
Julius Vira
committed

Commits on Jul 4, 2019

Merge fan-2019-gmdd-rc2
Julius Vira
committed
remove printf and other cleanup
Julius Vira
committed
debug previous merge + use more debug_fan for checkings
Julius Vira
committed

Commits on Jul 6, 2019

Add help for the -fan options
Julius Vira
committed
code cleanup
Julius Vira
committed

Commits on Jul 9, 2019

merge from github
Julius Vira
committed
debug declaration order + make water_relax_t an argument for the waterfunction
Julius Vira
committed
remove commented out water_relax_t
Julius Vira
committed

Commits on Jul 10, 2019

remove unnecessary changes to accumulated temperatures
Julius Vira
committed

Commits on Jul 11, 2019

debug fan-bgc coupling
Julius Vira
committed
remove unnecessary variable
Julius Vira
committed

Commits on Jul 12, 2019

guard agains negative windspeed (!)
Julius Vira
committed

Commits on Jul 20, 2019

make nh4 adsorption a namelist parameter
Julius Vira
committed
add comments to the tsl tend evaluation
Julius Vira
committed

Commits on Jul 24, 2019

change the runoff variable to qflx_surf
Julius Vira
committed

Commits on Jul 29, 2019

Changed array assignments to filter loops
Julius Vira
committed
Moved FAN soil moisture tendency to waterstatebulktype
Julius Vira
committed

Commits on Jul 30, 2019

separate variables for moisture tendency and moisture before SoilWater call
Julius Vira
committed

Commits on Aug 14, 2019

add check for arctic grass in addition to others
Julius Vira
committed
Remove !JV and !KO comments
Julius Vira
committed

Commits on Aug 15, 2019

make array dimensions named constants
Julius Vira
committed
manure_nh3 -> manure_nh4
Julius Vira
committed
handle_storage_v2 -> handle_storage
Julius Vira
committed
fix subName
Julius Vira
committed
remove commented out lines
Julius Vira
committed
renamed fertilizer tan pools to match the convetion in the FANv2 description paper
Julius Vira
committed
renamed fert_runoff and manure_runoff to fert_nh4_runoff and manure_nh4_runoff
Julius Vira
committed

Commits on Aug 17, 2019

comments
Julius Vira
committed
fix description of fract_spread_gass
Julius Vira
committed
ndep2 -> fan
Julius Vira
committed

Commits on Sep 4, 2019

initialize fan state variables also for special columns
Julius Vira
committed
option for landless/mixed manure per crop/land area
Julius Vira
committed
correct size for fluxes array
Julius Vira
committed
remove moldrup parameterizations; make dz_layer arguement everywhere; etc
Julius Vira
committed
Merge branch 'fan-2019-ctsm' of github.com:juliusvira/ctsm into fan-2019-ctsm
Julius Vira
committed

Commits on Sep 5, 2019

Merge branch 'manure-pre-crop' into fan-2019-ctsm
Julius Vira
committed
Merge branch 'fan-2019-ctsm' of https://github.com/juliusvira/ctsm into fan-2019-ctsm
Julius Vira
committed
Merge branch 'fan-2019-ctsm' of https://github.com/juliusvira/ctsm into fan-2019-ctsm
Julius Vira
committed
make manure balance check include stores/barns
Julius Vira
committed

Commits on Sep 10, 2019

Remove defunct storage balance check + make pH filling more obvious
Julius Vira
committed
remove legacy state and flux variables
Julius Vira
committed
remove legacy state and flux variables (2)
Julius Vira
committed
Crash if fan nh3 requested to coupler but fan is off
Julius Vira
committed
Merge branch 'fan-2019-ctsm' of https://github.com/juliusvira/ctsm into fan-2019-ctsm
Julius Vira
committed

Commits on Sep 19, 2019

Commits on Sep 21, 2019

Commits on Oct 1, 2019

Commits on Oct 2, 2019

added commits
Julius Vira
committed
added calculation of NFERTILIZATION depending on fan-bgc mode + new output variables for total manure N and sminn fluxes
Julius Vira
committed

Commits on Oct 9, 2019

zero nmanure if fan_to_bgc_crop
Julius Vira
committed
Use correct intent()
Julius Vira
committed
Fix wrong output variable pointer
Julius Vira
committed
Rename MAN_ -> MANURE_; revise warning messages
Julius Vira
committed

Commits on Oct 18, 2019

remove unused n_stored vars
Julius Vira
committed
fix initialization of nsynthfert
Julius Vira
committed

Commits on Dec 15, 2019

variable naming, units, comments, etc
Julius Vira
committed

Commits on Jan 18, 2020

supposedly not answer changing changes after Bill Sacks' comments
Julius Vira
committed
resolve conflicts
Julius Vira
committed
fix argument intent
Julius Vira
committed
Merge branch 'bill-sacks' of https://github.com/juliusvira/ctsm into bill-sacks
Julius Vira
committed

Commits on Jan 29, 2020

Use -abstol instead of +abstol to check for negativity
Julius Vira
committed
Fix array bounds, etc
Julius Vira
committed

Commits on Feb 9, 2020

Change the code to remove dependency of column/patch ordering
Julius Vira
committed
remove unnecessary if block
Julius Vira
committed

Commits on Aug 20, 2022

Merge tag 'ctsm1.0.dev097' into fan-2019-ctsm
ekluzek
committed

Commits on Aug 22, 2022

Commits on Aug 26, 2022

Commits on Aug 31, 2022

Commits on Sep 2, 2022

Commits on Sep 3, 2022

Add threaded FAN test fail to expected fails
ekluzek
committed

Commits on Sep 4, 2022

Merge tag 'ctsm5.1.dev021' into fan-2019-ctsm
ekluzek
committed

Commits on Sep 5, 2022

Commits on Sep 6, 2022

Document problems with the nuopc cases
ekluzek
committed

Commits on Sep 7, 2022

Commits on Sep 10, 2022

Add path for lilac to shr_fan_mod.F90 under cmeps so that LILAC can build
ekluzek
committed

Commits on Sep 14, 2022

Commits on Sep 21, 2022

Commits on Sep 22, 2022

Add a stub ROF Hist Clm51 Bgc-Crop compset
ekluzek
committed