Add nuopc shr methods

.github/workflows/srt.yml

@@ -26,15 +26,15 @@ jobs:
       CPPFLAGS: "-I/usr/include -I/usr/local/include"
       CIME_TEST_PLATFORM: ubuntu-latest
       # Versions of all dependencies can be updated here
-      PNETCDF_VERSION: pnetcdf-1.12.3
-      NETCDF_FORTRAN_VERSION: v4.6.0
-      MCT_VERSION: MCT_2.11.0
+      PNETCDF_VERSION: pnetcdf-1.13.0
+      NETCDF_FORTRAN_VERSION: v4.6.1
       PARALLELIO_VERSION: pio2_6_2
       NETCDF_C_PATH: /usr
       NETCDF_FORTRAN_PATH: ${HOME}/netcdf-fortran
       PNETCDF_PATH: ${HOME}/pnetcdf
       CIME_MODEL: cesm
       CIME_DRIVER: nuopc
+      ESMF_VERSION: v8.6.1b03
 
     # Steps represent a sequence of tasks that will be executed as part of the job
     steps:
@@ -89,15 +89,15 @@ jobs:
       - name: pip install
         run: pip install PyYAML
 
-      - name: mct install
-        run: |
-          git clone -b ${{ env.MCT_VERSION  }} https://github.com/MCSclimate/MCT libraries/mct
-          ls -l libraries/mct
-
-      - name: parallelio install
-        run: |
-          git clone -b ${{ env.PARALLELIO_VERSION  }} https://github.com/NCAR/ParallelIO libraries/parallelio
-          ls -l libraries/parallelio
+#      - name: mct install
+#        run: |
+#          git clone -b ${{ env.MCT_VERSION  }} https://github.com/MCSclimate/MCT libraries/mct
+#          ls -l libraries/mct
+#
+#      - name: parallelio install
+#        run: |
+#          git clone -b ${{ env.PARALLELIO_VERSION  }} https://github.com/NCAR/ParallelIO libraries/parallelio
+#          ls -l libraries/parallelio
 
       - name: cache pnetcdf
         id: cache-pnetcdf
@@ -146,6 +146,37 @@ jobs:
           clibdir=`nc-config --libdir`
           ln -fs $clibdir/lib* .
 
+      - name: Cache PARALLELIO
+        id: cache-PARALLELIO
+        uses: actions/cache@v3
+        with:
+          path: ${GITHUB_WORKSPACE}/pio
+          key: ${{ runner.os }}-${{ env.ParallelIO_VERSION }}-parallelio2
+      - name: Build ParallelIO
+        if: steps.cache-PARALLELIO.outputs.cache-hit != 'true'
+        uses: NCAR/ParallelIO/.github/actions/parallelio_cmake@9390e30e29d4ebbfbef0fc72162cacd9e8f25e4e
+        with:
+          parallelio_version: ${{ env.ParallelIO_VERSION }}
+          enable_fortran: True
+          install_prefix: ${GITHUB_WORKSPACE}/pio
+
+      - name: Install ESMF
+        uses: esmf-org/install-esmf-action@v1
+        env:
+          ESMF_COMPILER: gfortran
+          ESMF_BOPT: g
+          ESMF_COMM: openmpi
+          ESMF_NETCDF: nc-config
+          ESMF_PNETCDF: pnetcdf-config
+          ESMF_INSTALL_PREFIX: ${GITHUB_WORKSPACE}/ESMF
+          ESMF_PIO: external
+          ESMF_PIO_INCLUDE: ${GITHUB_WORKSPACE}/pio/include
+          ESMF_PIO_LIBPATH: ${GITHUB_WORKSPACE}/pio/lib
+        with:
+          version: ${{ env.ESMF_VERSION }}
+          esmpy: false
+          cache: true
+
       - name: Cache inputdata
         if: ${{ ! env.ACT }}
         uses: actions/cache@v3