{2025.06-001}[2025b] Dependencies of Python 3.13.5 by bedroge · Pull Request #10 · EESSI/dev.eessi.io-riscv

bedroge · 2026-01-18T11:07:56Z

* UnZip/6.0-GCCcore-14.3.0 (UnZip-6.0-GCCcore-14.3.0.eb)
* pkgconf/2.4.3-GCCcore-14.3.0 (pkgconf-2.4.3-GCCcore-14.3.0.eb)
* libffi/3.5.1-GCCcore-14.3.0 (libffi-3.5.1-GCCcore-14.3.0.eb)
* M4/1.4.20-GCCcore-14.3.0 (M4-1.4.20-GCCcore-14.3.0.eb)
* libtool/2.5.4-GCCcore-14.3.0 (libtool-2.5.4-GCCcore-14.3.0.eb)
* Perl/5.40.2-GCCcore-14.3.0 (Perl-5.40.2-GCCcore-14.3.0.eb)
* Autoconf/2.72-GCCcore-14.3.0 (Autoconf-2.72-GCCcore-14.3.0.eb)
* Automake/1.18-GCCcore-14.3.0 (Automake-1.18-GCCcore-14.3.0.eb)
* Autotools/20250527-GCCcore-14.3.0 (Autotools-20250527-GCCcore-14.3.0.eb)
* libtommath/1.3.0-GCCcore-14.3.0 (libtommath-1.3.0-GCCcore-14.3.0.eb)
* Tcl/9.0.1-GCCcore-14.3.0 (Tcl-9.0.1-GCCcore-14.3.0.eb)
* SQLite/3.50.1-GCCcore-14.3.0 (SQLite-3.50.1-GCCcore-14.3.0.eb)

bedroge · 2026-01-18T11:08:14Z

bot: build repo:dev.eessi.io-riscv-2025.06-001 instance:eessi-bot-riscv for:arch=riscv64/generic

riscv-eessi-io-bot · 2026-01-18T11:08:23Z

New job on instance eessi-bot-riscv for repository dev.eessi.io-riscv-2025.06-001
Building on: generic
Building for: riscv64/generic
Job dir: /home/eessibot/shared/jobs/2026.01/pr_10/261812

date	job status	comment
Jan 18 11:08:21 UTC 2026	submitted	job id `261812` awaits release by job manager
Jan 18 11:08:36 UTC 2026	released	job awaits launch by Slurm scheduler
Jan 18 11:09:40 UTC 2026	running	job `261812` is running
Jan 18 11:13:46 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-261812.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-riscv64-generic-riscv-1768734757.tar.zst` size: 0 MiB (227890 bytes) entries: 28 modules under 2025.06-001/software/linux/riscv64/generic/modules/all `UnZip/6.0-GCCcore-14.3.0.lua` software under 2025.06-001/software/linux/riscv64/generic/software `UnZip/6.0-GCCcore-14.3.0` reprod directories under 2025.06-001/software/linux/riscv64/generic/reprod no reprod directories in tarball other under 2025.06-001/software/linux/riscv64/generic no other files in tarball
Jan 18 11:13:46 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job261812.test` does not exist in job directory, or parsing it failed.

bedroge · 2026-01-18T12:15:42Z

Couldn't find file pkgconf-2.4.3.tar.gz anywhere, and downloading it didn't work either...

Downloaded it manually and copied it to the bot account.

bot: build repo:dev.eessi.io-riscv-2025.06-001 instance:eessi-bot-riscv for:arch=riscv64/generic

riscv-eessi-io-bot · 2026-01-18T12:15:51Z

New job on instance eessi-bot-riscv for repository dev.eessi.io-riscv-2025.06-001
Building on: generic
Building for: riscv64/generic
Job dir: /home/eessibot/shared/jobs/2026.01/pr_10/261813

date	job status	comment
Jan 18 12:15:50 UTC 2026	submitted	job id `261813` awaits release by job manager
Jan 18 12:16:53 UTC 2026	released	job awaits launch by Slurm scheduler
Jan 18 12:17:57 UTC 2026	running	job `261813` is running
Jan 19 08:26:31 UTC 2026	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job261813.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Jan 19 08:26:31 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job261813.test` does not exist in job directory, or parsing it failed.

boegel · 2026-01-18T12:53:19Z

Couldn't find file pkgconf-2.4.3.tar.gz anywhere, and downloading it didn't work either...
Downloaded it manually and copied it to the bot account.

There was some related discussion in the EasyBuild Slack, seems like distfiles.ariadne.space got blocklisted somehow.

There are alternatives, like https://distfiles.dereferenced.org/pkgconf/, so maybe it's wise if we update the pkgconf easyconfigs in EasyBuild to at least also consider that path?

bedroge · 2026-01-19T08:26:50Z

The Python installation failed:

== 2026-01-18 19:46:18,836 run.py:518 INFO Running 'python ...' shell command in /tmp/eessibot/easybuild/build/Python/3.13.5/GCCcore-14.3.0/pip/pip-25.1.1:
        python -c 'from ctypes import util; print(util.find_library("libpython3.so"))'
== 2026-01-18 19:46:21,212 run.py:632 INFO 'python ...' shell command completed successfully
== 2026-01-18 19:46:21,213 run.py:634 INFO Output of 'python ...' shell command (stdout + stderr):
None

== 2026-01-18 19:46:21,214 python.py:751 DEBUG Matching regular expression pattern ^/cvmfs/dev\.eessi\.io/riscv/versions/2025\.06\-001/software/linux/riscv64/generic/software/Python/3\.13\.5\-GCCcore\-14\.3\.0.*libpython3\.so$ to string None
== 2026-01-18 19:46:22,678 build_log.py:233 ERROR EasyBuild encountered an error: Finding the library libpython3.so using ctypes.util.find_library('libpython3.so') failed. The ctypes Python module requires a patch when EasyBuild is configured to fi
lter $LD_LIBRARY_PATH. Please check if you specified a patch through patch_ctypes_ld_library_path and check the logs to see if it applied correctly. (at easybuild/easyblocks/p/python.py:764 in _sanity_check_ctypes_ld_library_path_patch)

bedroge · 2026-01-19T08:36:30Z

Let's get the dependencies of Python deployed first:

bot: build repo:dev.eessi.io-riscv-2025.06-001 instance:eessi-bot-riscv for:arch=riscv64/generic

riscv-eessi-io-bot · 2026-01-19T08:36:39Z

New job on instance eessi-bot-riscv for repository dev.eessi.io-riscv-2025.06-001
Building on: generic
Building for: riscv64/generic
Job dir: /home/eessibot/shared/jobs/2026.01/pr_10/261840

date	job status	comment
Jan 19 08:36:38 UTC 2026	submitted	job id `261840` awaits release by job manager
Jan 19 08:37:37 UTC 2026	released	job awaits launch by Slurm scheduler
Jan 19 08:38:40 UTC 2026	running	job `261840` is running
Jan 19 10:41:59 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-261840.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-riscv64-generic-riscv-1768819213.tar.zst` size: 31 MiB (32992997 bytes) entries: 4799 modules under 2025.06-001/software/linux/riscv64/generic/modules/all `Autoconf/2.72-GCCcore-14.3.0.lua` `Automake/1.18-GCCcore-14.3.0.lua` `Autotools/20250527-GCCcore-14.3.0.lua` `M4/1.4.20-GCCcore-14.3.0.lua` `Perl/5.40.2-GCCcore-14.3.0.lua` `SQLite/3.50.1-GCCcore-14.3.0.lua` `Tcl/9.0.1-GCCcore-14.3.0.lua` `UnZip/6.0-GCCcore-14.3.0.lua` `libffi/3.5.1-GCCcore-14.3.0.lua` `libtommath/1.3.0-GCCcore-14.3.0.lua` `libtool/2.5.4-GCCcore-14.3.0.lua` `pkgconf/2.4.3-GCCcore-14.3.0.lua` software under 2025.06-001/software/linux/riscv64/generic/software `Autoconf/2.72-GCCcore-14.3.0` `Automake/1.18-GCCcore-14.3.0` `Autotools/20250527-GCCcore-14.3.0` `M4/1.4.20-GCCcore-14.3.0` `Perl/5.40.2-GCCcore-14.3.0` `SQLite/3.50.1-GCCcore-14.3.0` `Tcl/9.0.1-GCCcore-14.3.0` `UnZip/6.0-GCCcore-14.3.0` `libffi/3.5.1-GCCcore-14.3.0` `libtommath/1.3.0-GCCcore-14.3.0` `libtool/2.5.4-GCCcore-14.3.0` `pkgconf/2.4.3-GCCcore-14.3.0` reprod directories under 2025.06-001/software/linux/riscv64/generic/reprod no reprod directories in tarball other under 2025.06-001/software/linux/riscv64/generic no other files in tarball
Jan 19 10:41:59 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job261840.test` does not exist in job directory, or parsing it failed.
Jan 20 08:44:20 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-riscv64-generic-riscv-1768819213.tar.zst` to S3 bucket succeeded

Neves-P · 2026-01-20T09:11:28Z

Staging PR merged and ingestion completed.

add FlexiBLAS-3.4.5-GCC-14.3.0.eb

67149e5

bedroge added the 2025.06-001 label Jan 18, 2026

add Python deps

6830d55

bedroge changed the title ~~{2025.06-001}[2025b] FlexiBLAS 3.4.5~~ {2025.06-001}[2025b] Dependencies of Python 3.13.5 Jan 19, 2026

bedroge mentioned this pull request Jan 19, 2026

{2025.06-001}[2025b] FFTW 3.3.10 #12

Merged

Neves-P added the bot:deploy label Jan 20, 2026

Neves-P merged commit aa363e8 into EESSI:main Jan 20, 2026

bedroge deleted the flexiblas_2025b branch January 20, 2026 09:12

bedroge mentioned this pull request Jan 20, 2026

{2025.06-001}[2025b] Python 3.13.5 #13

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{2025.06-001}[2025b] Dependencies of Python 3.13.5#10

{2025.06-001}[2025b] Dependencies of Python 3.13.5#10
Neves-P merged 2 commits intoEESSI:mainfrom
bedroge:flexiblas_2025b

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