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Dessimoz Lab

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  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 146 18

  2. fold_tree fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    Jupyter Notebook 72 9

  3. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 70 13

  4. OMArk OMArk Public

    Python 69 7

  5. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 28 10

  6. omamer omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    Python 16 5

Repositories

Showing 10 of 44 repositories
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    DessimozLab/FastOMA’s past year of commit activity
    Python 70 MPL-2.0 13 6 3 Updated Feb 15, 2025
  • foldtree2 Public

    foldtree2

    DessimozLab/foldtree2’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 12, 2025
  • HogProf Public

    Phylogenetic profiling with orthology data

    DessimozLab/HogProf’s past year of commit activity
    Jupyter Notebook 10 MIT 2 0 1 Updated Feb 11, 2025
  • Rmath4-python Public Forked from ntessore/Rmath-python

    The standalone Rmath library from R version 4 for Python

    DessimozLab/Rmath4-python’s past year of commit activity
    C 0 GPL-2.0 1 0 0 Updated Feb 10, 2025
  • read2tree Public

    a tool for inferring species tree from sequencing reads

    DessimozLab/read2tree’s past year of commit activity
    Python 146 MIT 18 18 0 Updated Feb 9, 2025
  • OMArk Public
    DessimozLab/OMArk’s past year of commit activity
    Python 69 LGPL-3.0 7 5 3 Updated Feb 4, 2025
  • pyoma Public

    Python library to interact with OMA hdf5 files

    DessimozLab/pyoma’s past year of commit activity
    Python 1 MPL-2.0 0 0 1 Updated Jan 27, 2025
  • pylabeledrf Public

    A package to compute the Robinson Fould distance extended to labeled topologies.

    DessimozLab/pylabeledrf’s past year of commit activity
    Jupyter Notebook 5 MIT 0 0 1 Updated Jan 24, 2025
  • pyopa Public

    A fast implementation of optimal pairwise alignments with python

    DessimozLab/pyopa’s past year of commit activity
    C 7 MPL-2.0 2 2 6 Updated Jan 24, 2025
  • omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    DessimozLab/omamer’s past year of commit activity
    Python 16 LGPL-3.0 5 3 1 Updated Jan 24, 2025
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