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56 changes: 47 additions & 9 deletions doc/UsersGuide/source/InputsOutputs.rst
Original file line number Diff line number Diff line change
Expand Up @@ -172,75 +172,113 @@ MOM6
Static datasets (i.e., *fix files*)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

.. todo:: Information needed

The static input files for global configurations are listed and described in :numref:`Table %s <MOM6_FixFiles>`.

.. _MOM6_FixFiles:

.. list-table:: *Fix files containing climatological information*
:widths: 40 50
:widths: 40 50 15
:header-rows: 1

* - Filename
- Description
- Used in resolution
* - runoff.daitren.clim.1440x1080.v20180328.nc
- climatological runoff
- 0.25
* - runoff.daitren.clim.720x576.v20180328.nc
- climatological runoff
- 0.50
* - seawifs-clim-1997-2010.1440x1080.v20180328.nc
- climatological chlorophyll concentration in sea water
- 0.25
* - seawifs-clim-1997-2010.720x576.v20180328.nc
- climatological chlorophyll concentration in sea water
- 0.50
* - seawifs_1998-2006_smoothed_2X.nc
- climatological chlorophyll concentration in sea water
- 1.00
* - tidal_amplitude.v20140616.nc
- climatological tide amplitude
- 0.25
* - tidal_amplitude.nc
- climatological tide amplitude
- 0.50, 1.00
* - geothermal_davies2013_v1.nc
- climatological geothermal heat flow

- 0.50, 0.25
* - KH_background_2d.nc
- climatological 2-d background harmonic viscosities
- 1.00
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Grid description and initial condition files
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

.. todo:: Information needed

The input files containing grid information and the initial conditions for global configurations are listed and described in :numref:`Table %s <MOM6_GridICFiles>`.

.. _MOM6_GridICFiles:

.. list-table:: *Input files containing grid information and initial conditions for global configurations*
:widths: 35 50 15
:widths: 35 35 25 15
:header-rows: 1

* - Filename
- Description
- Valid RES options
- Date-dependent
* - ocean_hgrid.nc
- horizonal grid information
- 1.00, 0.50, 0.25
-
* - ocean_mosaic.nc
- specify horizonal starting and ending points index
- 1.00, 0.50, 0.25
-
* - ocean_topog.nc
- ocean topography
- 1.00, 0.50, 0.25
-
* - ocean_mask.nc
- lans/sea mask
- 1.00, 0.50, 0.25
-
* - hycom1_75_800m.nc
* - hycom1_75_800m.nc
- vertical coordinate level thickness
- 1.00, 0.50, 0.25
-
* - layer_coord.nc
- vertical layer target potential density
- 1.00, 0.50, 0.25
-
* - All_edits.nc
- specify grid points where topography are manually modified to adjust throughflow strength for narrow channels
- 0.25
-
* - topo_edits_011818.nc
- specify grid points where topography are manually modified to adjust throughflow strength for narrow channels
- 1.00
-
* - MOM_channels_global_025
- specifies restricted channel widths
- 0.50, 0.25
-
* - MOM_channel_SPEAR
- specifies restricted channel widths
- 1.00
-
* - interpolate_zgrid_40L.nc
- specify target depth for output
- 1.00, 0.50, 0.25
-
* - MOM.res*nc
- ocean initial conditions
- ocean initial conditions (from CPC ocean DA)
- 0.25
-
* - MOM6_IC_TS.nc
- ocean temperature and salinity initial conditions (from CFSR)
- 1.00, 0.50, 0.25
-

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CICE6
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