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Harry Hochheiser edited this page Nov 13, 2024 · 20 revisions

Cancer Deep Phenotype Extraction, Translational Medicine (DeepPhe-XN)

Getting started

We suggest you start with the introduction to the DeepPhe-XN system.

Installing DeepPhe-XN

If you are ready to move on, you can start looking into the Mac Installation or Windows Installation depending on the system you're running.

After Installation

Once you have the correct installation installed you should be ready to try some example files. Step-by-step guides describe how you can run DeepPhe on Macs,or Windows, or from the command-line.

Specifying and Interpreting Output

DeepPhe-CR can provide detailed format in multiple formats. Learn how to specify and interpret outputs.

Beyond the basics

If you are looking for more detailed information beyond installation or a quickstart tutorial, you can take a look through the links available on the right side of the screen.

Open the Pages section (above) to view all pages by title.

Mission

Installation
   Windows
   Mac
   Linux
   Known Issues

Quickstart
   Windows Quickstart Tutorial
   Mac Quickstart Tutorial
   Command line-execution

Using DeepPhe-XN With Your Own Files
   Input File Requirements
   Configuring DeepPhe Phenotype Summarizer
   Specifying and Interpreting Outputs

Example Files Description
   Using DeepPhe-XN Visualizer
   Additional Output File Types
   Example File Data Specifics

About the DeepPhe Pipeline
   Pipeline Description

Code Modules

Licensing
Funding
Contact / Help

Wiki Conventions

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