ModuleNotFoundErrot: No module named 'numpy.testing.decorators'

[prnvkhndlwl]

Hey!

So I started on a fresh installation of ubuntu 18.04 and everything worked including building the docker image and entering the docker container. However, when inside the container -
export DLClight=True -> works
ipython -> works
import deeplabcut -> I get the following error

prnv@8f1fe0ba761e:/$ export DLClight=True
prnv@8f1fe0ba761e:/$ ipython
Python 3.6.3 (default, Oct 6 2017, 08:44:35)
Type 'copyright', 'credits' or 'license' for more information
IPython 6.2.1 -- An enhanced Interactive Python. Type '?' for help.

In [1]: import deeplabcut
DLC loaded in light mode; you cannot use any GUI (labeling, relabeling and standalone GUI)

ModuleNotFoundError Traceback (most recent call last)
in ()
----> 1 import deeplabcut

/usr/local/lib/python3.6/dist-packages/deeplabcut/init.py in ()
41 print("Project loaded in colab-mode. Apparently Colab has trouble loading statsmodels, so the smoothing & outlier frame extraction is disabled. Sorry!")
42 else:
---> 43 from deeplabcut.refine_training_dataset import extract_outlier_frames, merge_datasets
44 from deeplabcut.post_processing import filterpredictions, analyzeskeleton
45

/usr/local/lib/python3.6/dist-packages/deeplabcut/refine_training_dataset/init.py in ()
18 from deeplabcut.refine_training_dataset.auxfun_drag import *
19
---> 20 from deeplabcut.refine_training_dataset.outlier_frames import *

/usr/local/lib/python3.6/dist-packages/deeplabcut/refine_training_dataset/outlier_frames.py in ()
14 from pathlib import Path
15 import pandas as pd
---> 16 import statsmodels.api as sm
17 from deeplabcut.utils import auxiliaryfunctions, visualization
18 from deeplabcut.utils import frameselectiontools

/usr/local/lib/python3.6/dist-packages/statsmodels/api.py in ()
5 from . import tools
6 from .tools.tools import add_constant, categorical
----> 7 from . import regression
8 from .regression.linear_model import OLS, GLS, WLS, GLSAR
9 from .regression.recursive_ls import RecursiveLS

/usr/local/lib/python3.6/dist-packages/statsmodels/regression/init.py in ()
----> 1 from .linear_model import yule_walker
2
3 from statsmodels.tools._testing import PytestTester
4
5 all = ['yule_walker', 'test']

/usr/local/lib/python3.6/dist-packages/statsmodels/regression/linear_model.py in ()
38 import numpy as np
39 from scipy.linalg import toeplitz
---> 40 from scipy import stats
41 from scipy import optimize
42

/usr/local/lib/python3.6/dist-packages/scipy/stats/init.py in ()
343 from .stats import *
344 from .distributions import *
--> 345 from .morestats import *
346 from ._binned_statistic import *
347 from .kde import gaussian_kde

/usr/local/lib/python3.6/dist-packages/scipy/stats/morestats.py in ()
10 sqrt, ceil, floor, array, compress,
11 pi, exp, ravel, count_nonzero, sin, cos, arctan2, hypot)
---> 12 from numpy.testing.decorators import setastest
13
14 from scipy._lib.six import string_types

ModuleNotFoundError: No module named 'numpy.testing.decorators'

Any suggestions?

Also a sidenote -
on ubuntu 18.04
'sudo apt-get install nvidia-docker' seems to not work but 'sudo apt-get install nvidia-docker2' does the job!

Thank you so much! :)

[sbtnRey]

I had the same issue recently, "pip install numpy==1.16.4" in the container seemed to fix it.

[prnvkhndlwl]

It worked! Thank you so much for the quick response!!!

[som21-star]

I had the same issue recently, "pip install numpy==1.16.4" in the container seemed to fix it.

Great!!...recently, I had the same issue. Now it's fixed. Thanks buddy.

[Krishna-Sarath-Maddula]

I had the same issue recently, "pip install numpy==1.16.4" in the container seemed to fix it.

Worked. Thanks a lot!

[scollay]

Same here - pip'd something and it broke everything upgrading to 1.18.5
Back to 1.16.4 and all fine.
Thanks!

[pnidhi26]

Thanks, its work for me. New update over numpy 1.19 version have some issue but lower versions work perfectly.

[chetan11-stack]

I had the same issue recently, "pip install numpy==1.16.4" in the container seemed to fix it.

Thank you!!