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Releases: DReichLab/AdmixTools

v8.0.2

06 Sep 15:33
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This minor release fixes a bug when reading transpose packed data files larger than 2GB.

v8.0.1

16 Aug 14:34
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Minor bugfix release relating to Makefile

v8.0.0

02 Aug 16:39
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This release introduces a new transpose packed format, which enables fast merging and subsetting by individuals.

v7.0.2

22 Jun 15:33
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Version 7.0.2 has important bugfixes to qpfstats.

v7.0.1

28 Jul 21:15
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old qpfstats could behave badly when some samples had very low coverage

v7.0

24 Jun 16:00
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  1. Users of ADMIXTOOLS should know that an alternate version in R (native mode -- reimplementation)
    written by Robert Maier is also available on Github.
    See https://github.com/uqrmaie1/admixtools
    Executables run fast, and it has features not available in this C version, such as interactive
    exploration of graph phylogenies

  2. Version 7.0 has numerous upgrades.
    a) Two new executables --qpfstats qpfmv allow precomputation of f-statistic basis.
    This can greatly reduce computation costs.
    b) qpAdm, qpWave, qpGraph support qpfstats output as input.
    *** This is a much improved way of running with allsnps: YES. ***
    c) A new experimental feature of qpGraph (halfscore: YES) allows
    comparison of 2 phylogenies + a (weak) goodness of fit score. Be careful
    if running with a large nnumber of populations and consider reducing block size say
    blgsize: .005

v6.0

10 Jan 20:22
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Many improvements/bugfixes since earlier release

v5.1

27 Sep 17:35
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Some minor bugfixes and an upgrade that Stephan Schiffels asked for

v5.0

28 Jun 17:54
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Nick's updates to 5.0

rolloff take variant chromosome numbers

11 Jan 19:00
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A new parameter "numchrom" is available for rolloff. You can set chromosome number with this parameter.

This is an example:
numchrom: 28