Skip to content
Draft
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions ARCHITECTURE.md

Large diffs are not rendered by default.

2 changes: 2 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -40,6 +40,8 @@ All notable changes to TEPP are documented here. The format follows Keep a Chang

- `event_core` adds bounded Allen interval-consistency classification, atomic path-consistency closure, contradiction/resource refusals, and an explicit dependency-error fallback without claiming unrestricted global satisfiability.

- `psychometric_core` recovers the Driver, Oud, and Voelkle (2017, §4.3, pp. 9–10; §7.1, pp. 18–19; 2017-era ctsem `ctModel.R` / `ctFit.R` / `ctGenerate.R`; JSS PDF re-opened 2026-08-30T17:45Z from https://www.jstatsoft.org/index.php/jss/article/download/v077i05/1104) scalar first-occasion trait effect on current main (register items 112–113). Section 4.3 and §7.1 name traits the stable between-subject differences (`TRAITVAR` `φ_ξ`). The 2017-era `ctModel.R` names `T0TRAITEFFECT` the `n.latent × n.latent` first-occasion trait path and freely labels it when `TRAITVAR` is specified. The 2017-era `ctFit.R` places that matrix in the OpenMx `A` regression block from the trait latents to the process latents at `T0`. The default `stationary` argument includes `'T0TRAITEFFECT'` and then fixes free cells to the identity. The 2017-era `ctGenerate.R` writes `T0MEANS = T0MEANS + T0TRAITEFFECT %*% traits`. The JSS Table 2 / Table 3 do not print `T0TRAITEFFECT`; this crate recovers the 2017-era named matrix, not a new std map. The scalar first-occasion shift is `t0_trait · trait` after finite `t0_trait` and finite trait score. Form `t0_trait` first, then multiply by the trait score. A zero coefficient or zero trait is exactly zero. A signed trait score is a signed shift. The stationary identity default `t0_trait = 1` recovers the trait score and remains a distinct named quantity from the score. `t0_b z` is Table 3 `T0TIPREDEFFECT` and is not this shift even when the numbers equal. `t0_m x0` is Table 3 `T0TDPREDEFFECT` and is not this shift even when the numbers equal. `t0_trait` is the coefficient, not the shift; equal numbers when `trait = 1` remain distinct named quantities. The 2017-era `summary.ctsemFit.R` comments out `T0TRAITVAR = T0TRAITEFFECT %*% TRAITVAR %*% t(T0TRAITEFFECT)` with "is this valid?". This crate does not invent `T0TRAITVAR`. `t0_trait² · TRAITVAR` is that extra variance, not this shift. `T0` is an event-time occasion, so a non-event clock fails closed. An overflowing product fails closed. Free first-occasion trait effect does not require stable `a < 0`. Meredith (1993) remains unread (Unpaywall historically `is_oa: false`; Springer `content/pdf` is an HTML stub). Mislevy (1991, *Psychometrika, 56*, 177–196) remains unread on the same terms (DOI `10.1007/bf02294457`). Still not a Kalman filter, not a matrix `expm`, not ESEM estimation, not DSEM, and not ctsem estimation.

- `psychometric_core` recovers the Driver, Oud, and Voelkle (2017, Table 2, p. 12 `MANIFESTTRAITVAR`; §7.1, p. 19; p. 16 `MANIFESTTRAITVARstd`; footnote 4; 2017-era ctsem `summary.ctsemFit.R`; JSS PDF re-opened 2026-08-27T14:20Z from https://www.jstatsoft.org/index.php/jss/article/download/v077i05/1104) scalar standardised manifest-trait variance on current main after `0ce16e8` dropped the pre-consolidation code while research notes already named the map (register items 83–84). Table 2 names `MANIFESTTRAITVAR` `Ψ_τ` the additional time-invariant variance-covariance on the measurement level and sets it `NULL` when there is no manifest trait. Equation 5 writes `Γ ~ N(τ, Ψ)` and names that covariance the manifest traits. Section 7.1 names manifest traits stable individual differences in indicator levels, distinct from process-level `TRAITVAR` `φ_ξ`. Page 16 prints standardised matrices with the suffix `std` when appropriate. The printed example on p. 16 is `discreteDRIFTstd`, not `MANIFESTTRAITVARstd`. Footnote 4 standardises using only the relevant variance, not the total. The relevant variance for that named indicator-level correlation is `MANIFESTTRAITVAR`, not process-level `TRAITVAR` and not residual `MANIFESTVAR` `θ`. The 2017-era source forms `MANIFESTTRAITVARstd` only when `MANIFESTTRAITVAR != 0`, as `solve(sqrt(diag(MANIFESTTRAITVAR) + ridging)) %&% MANIFESTTRAITVAR` when `verbose = TRUE`. OpenMx `%&%` is `t(A) %*% B %*% A`. Unlike `TRAITVARstd`, that formation adds `diag(c(ridging), n.manifest)`. The default `ridging = FALSE` adds 0, not `0.0001`; that ridge is a numerical hack and is not this exact map. The scalar correlation is `ψ / ψ = 1` after strictly positive `MANIFESTTRAITVAR`. Form strictly positive `ψ` first, then `1 / √ψ`, then `(1 / √ψ) ψ (1 / √ψ)`. Unstandardised `MANIFESTTRAITVAR` is defined for a zero trait; standardised `MANIFESTTRAITVAR` is not. Zero `MANIFESTTRAITVAR` skips forming `MANIFESTTRAITVARstd` in the 2017-era source and fails closed here. Indicator-level trait variance is an event-time structural quantity, so a non-event clock fails closed. `MANIFESTTRAITVAR` does not require stable `a < 0`. Distinct positive `ψ` recover the same 1. `trait / trait = 1` is `TRAITVARstd` and recovers the same number and remains a distinct named quantity. `θ` is `MANIFESTVAR` and is measurement error, not this correlation. Meredith (1993) remains unread (web search 2026-08-27T14:20Z: Springer/Cambridge Core paywalled; Unpaywall historically `is_oa: false`; Springer `content/pdf` is an HTML stub). Mislevy (1991, *Psychometrika, 56*, 177–196) remains unread on the same terms (DOI `10.1007/bf02294457`). Still not a Kalman filter, not a matrix `expm`, not ESEM estimation, not DSEM, and not ctsem estimation.

- `psychometric_core` recovers the Driver, Oud, and Voelkle (2017, Table 2, p. 12 `TRAITVAR`; §7.1, pp. 18–19; p. 16 `TRAITVARstd`; footnote 4; 2017-era ctsem `summary.ctsemFit.R`; JSS PDF re-opened 2026-08-26T17:45Z from https://www.jstatsoft.org/index.php/jss/article/download/v077i05/1104) scalar standardised trait variance on current main after `0ce16e8` dropped the pre-consolidation code while research notes already named the map (register items 81–82). Table 2 names `TRAITVAR` `φ_ξ` the latent trait variance/covariance and sets it `NULL` when there is no trait. Section 7.1 names traits the stable between-subject differences (unit-level unobserved heterogeneity). Page 16 prints standardised matrices with the suffix `std` when appropriate. The printed example on p. 16 is `discreteDRIFTstd`, not `TRAITVARstd`. Footnote 4 standardises using only the relevant variance, not the total. The relevant variance for that named between-subject correlation is `TRAITVAR`, not free first-occasion `T0VAR` and not process-dynamics `asymDIFFUSION`. The 2017-era source forms `TRAITVARstd` only when `TRAITVAR != 0`, as `solve(sqrt(diag(TRAITVAR))) %&% TRAITVAR` when `verbose = TRUE`. OpenMx `%&%` is `t(A) %*% B %*% A`. Unlike `T0VARstd`, that formation uses `diag(diag(TRAITVAR))` and does not add `diag(c(ridging))`. The ridge is a `T0VAR` numerical hack and is not this exact map. The scalar correlation is `trait / trait = 1` after strictly positive `TRAITVAR`. Form strictly positive `trait` first, then `1 / √trait`, then `(1 / √trait) trait (1 / √trait)`. Unstandardised `TRAITVAR` is defined for a zero trait; standardised `TRAITVAR` is not. Zero `TRAITVAR` skips forming `TRAITVARstd` in the 2017-era source and fails closed here. Between-subject variance is an event-time structural quantity, so a non-event clock fails closed. `TRAITVAR` does not require stable `a < 0`. Distinct positive `trait` recover the same 1. `p_0 / p_0 = 1` is `T0VARstd` and recovers the same number and remains a distinct named quantity. `t0_b² v` is `addedT0TIPREDVAR` and is extra first-occasion TI variance, not this correlation. Meredith (1993) remains unread (Unpaywall 2026-08-26T17:20Z: `is_oa: false`; OpenAlex closed; Springer `content/pdf` is an HTML stub). Mislevy (1991, *Psychometrika, 56*, 177–196) remains unread on the same terms (DOI `10.1007/bf02294457`; Unpaywall `is_oa: false`). Still not a Kalman filter, not a matrix `expm`, not ESEM estimation, not DSEM, and not ctsem estimation.
Expand Down
2 changes: 1 addition & 1 deletion CLAUDE.md

Large diffs are not rendered by default.

58 changes: 58 additions & 0 deletions crates/psychometric_core/src/error.rs
Original file line number Diff line number Diff line change
Expand Up @@ -710,6 +710,32 @@ pub enum PsychometricError {
/// `MANIFESTVARstd`. `λ² Var(η) + θ` is `Var(y)`, not the
/// correlation form of `Θ`.
ObservedVarianceIsNotStandardisedManifestVariance,

/// Driver Table 3 `T0TIPREDEFFECT` `t0_b z` was treated as
/// 2017-era `T0TRAITEFFECT`. The TI first-occasion shift is a
/// predictor effect; `T0TRAITEFFECT` is the RAM `A`-path from
/// traits to latents at `T0`. Equal numbers when `t0_b z =
/// t0_trait · trait` remain distinct named quantities.
InitialTimeIndependentEffectIsNotInitialTraitEffect,
/// Driver Table 3 `T0TDPREDEFFECT` `t0_m x0` was treated as
/// 2017-era `T0TRAITEFFECT`. The TD first-occasion shift is a
/// predictor effect; `T0TRAITEFFECT` is the trait path into
/// `T0MEANS`. Equal numbers when `t0_m x0 = t0_trait · trait`
/// remain distinct named quantities.
InitialTimeDependentEffectIsNotInitialTraitEffect,
/// 2017-era `T0TRAITEFFECT` `t0_trait` was treated as the
/// first-occasion trait shift. The coefficient is the RAM
/// `A`-path; the shift is `t0_trait · trait`. Equal numbers
/// when `trait = 1` remain distinct named quantities.
InitialTraitCoefficientIsNotInitialTraitEffect,
/// Commented 2017-era `T0TRAITVAR` `t0_trait² · TRAITVAR` was
/// treated as `T0TRAITEFFECT`. That quadratic form is extra
/// first-occasion trait variance (`summary.ctsemFit.R` comments
/// it out with "is this valid?"); this crate does not invent
/// it. The shift is `t0_trait · trait`, not that extra. Equal
/// numbers when `t0_trait = trait = TRAITVAR` remain distinct
/// named quantities.
InitialTraitExtraVarianceIsNotInitialTraitEffect,
}

impl fmt::Display for PsychometricError {
Expand Down Expand Up @@ -1235,6 +1261,18 @@ impl fmt::Display for PsychometricError {
Self::ObservedVarianceIsNotStandardisedManifestVariance => {
"observed-indicator variance is not standardised measurement-error variance"
}
Self::InitialTimeIndependentEffectIsNotInitialTraitEffect => {
"first-occasion time-independent predictor effect is not the first-occasion trait effect"
}
Self::InitialTimeDependentEffectIsNotInitialTraitEffect => {
"first-occasion time-dependent predictor effect is not the first-occasion trait effect"
}
Self::InitialTraitCoefficientIsNotInitialTraitEffect => {
"first-occasion trait coefficient is not the first-occasion trait effect"
}
Self::InitialTraitExtraVarianceIsNotInitialTraitEffect => {
"first-occasion extra trait variance is not the first-occasion trait effect"
}
};
formatter.write_str(message)
}
Expand Down Expand Up @@ -2073,4 +2111,24 @@ mod tests {
"measurement error is not standardised manifest-trait variance"
);
}

#[test]
fn initial_trait_effect_boundary_messages_are_stable() {
assert_eq!(
PsychometricError::InitialTimeIndependentEffectIsNotInitialTraitEffect.to_string(),
"first-occasion time-independent predictor effect is not the first-occasion trait effect"
);
assert_eq!(
PsychometricError::InitialTimeDependentEffectIsNotInitialTraitEffect.to_string(),
"first-occasion time-dependent predictor effect is not the first-occasion trait effect"
);
assert_eq!(
PsychometricError::InitialTraitCoefficientIsNotInitialTraitEffect.to_string(),
"first-occasion trait coefficient is not the first-occasion trait effect"
);
assert_eq!(
PsychometricError::InitialTraitExtraVarianceIsNotInitialTraitEffect.to_string(),
"first-occasion extra trait variance is not the first-occasion trait effect"
);
}
}
Loading
Loading