Skip to content
Draft
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion ARCHITECTURE.md

Large diffs are not rendered by default.

2 changes: 2 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -40,6 +40,8 @@ All notable changes to TEPP are documented here. The format follows Keep a Chang

- `event_core` adds bounded Allen interval-consistency classification, atomic path-consistency closure, contradiction/resource refusals, and an explicit dependency-error fallback without claiming unrestricted global satisfiability.

- `psychometric_core` recovers the Driver, Oud, and Voelkle (2017, Table 2, p. 12 `T0TDPREDCOV`; Table 3, p. 13 `T0TDPREDEFFECT`; 2017-era ctsem `ctModel.R` / `ctFit.R`; JSS PDF re-opened 2026-08-30T16:40Z from https://www.jstatsoft.org/index.php/jss/article/download/v077i05/1104) scalar first-occasion time-dependent predictor covariance on current main (register items 110–111). Table 2 names `T0TDPREDCOV` the `n.latent × (Tpoints × n.TDpred)` covariance matrix between latents at `T0` and time-dependent predictors and defaults it to 0. The 2017-era `ctFit.R` places that matrix in the OpenMx `S` covariance block. Table 3 names `T0TDPREDEFFECT` the first-occasion TD *effect* (a regression). The SEM conversion is `T0TDPREDEFFECT = T0TDPREDCOV * solve(TDPREDVAR)`, so the scalar covariance is `t0_m · v` after finite `t0_m` and `v ≥ 0`. Form `t0_m` first, then multiply by `v`. A zero coefficient or zero predictor variance is exactly zero. A signed coefficient is a signed covariance. `t0_m` is `T0TDPREDEFFECT`, not this covariance; equal numbers when `v = 1` remain distinct named quantities. Analog extra `t0_m² v` is the analog of `addedT0TIPREDVAR`; Table 2 names `T0TDPREDCOV` the covariance, not that extra; equal numbers when `t0_m = 1` remain distinct named quantities. The 2017-era `summary.ctsemFit.R` comments out `TDPREDVAR` / `TDPREDVARstd` and does not form `T0TDPREDCOV` or `addedT0TDPREDVAR` in summary. This crate does not invent `TDPREDVARstd`. `t0_b · v` is the TI analog covariance and is not this map even when `t0_m = t0_b`. Process `m · v` is `TDPREDEFFECT × TDPREDVAR` and is not this first-occasion map even when `t0_m = m`. `v < 0` fails closed. `T0` is an event-time occasion, so a non-event clock fails closed. An overflowing product fails closed. Free first-occasion covariance does not require stable `a < 0`. Meredith (1993) remains unread (Unpaywall historically `is_oa: false`; Springer `content/pdf` is an HTML stub). Mislevy (1991, *Psychometrika, 56*, 177–196) remains unread on the same terms (DOI `10.1007/bf02294457`). Still not a Kalman filter, not a matrix `expm`, not ESEM estimation, not DSEM, and not ctsem estimation.

- `psychometric_core` recovers the Driver, Oud, and Voelkle (2017, Table 2, p. 12 `MANIFESTTRAITVAR`; §7.1, p. 19; p. 16 `MANIFESTTRAITVARstd`; footnote 4; 2017-era ctsem `summary.ctsemFit.R`; JSS PDF re-opened 2026-08-27T14:20Z from https://www.jstatsoft.org/index.php/jss/article/download/v077i05/1104) scalar standardised manifest-trait variance on current main after `0ce16e8` dropped the pre-consolidation code while research notes already named the map (register items 83–84). Table 2 names `MANIFESTTRAITVAR` `Ψ_τ` the additional time-invariant variance-covariance on the measurement level and sets it `NULL` when there is no manifest trait. Equation 5 writes `Γ ~ N(τ, Ψ)` and names that covariance the manifest traits. Section 7.1 names manifest traits stable individual differences in indicator levels, distinct from process-level `TRAITVAR` `φ_ξ`. Page 16 prints standardised matrices with the suffix `std` when appropriate. The printed example on p. 16 is `discreteDRIFTstd`, not `MANIFESTTRAITVARstd`. Footnote 4 standardises using only the relevant variance, not the total. The relevant variance for that named indicator-level correlation is `MANIFESTTRAITVAR`, not process-level `TRAITVAR` and not residual `MANIFESTVAR` `θ`. The 2017-era source forms `MANIFESTTRAITVARstd` only when `MANIFESTTRAITVAR != 0`, as `solve(sqrt(diag(MANIFESTTRAITVAR) + ridging)) %&% MANIFESTTRAITVAR` when `verbose = TRUE`. OpenMx `%&%` is `t(A) %*% B %*% A`. Unlike `TRAITVARstd`, that formation adds `diag(c(ridging), n.manifest)`. The default `ridging = FALSE` adds 0, not `0.0001`; that ridge is a numerical hack and is not this exact map. The scalar correlation is `ψ / ψ = 1` after strictly positive `MANIFESTTRAITVAR`. Form strictly positive `ψ` first, then `1 / √ψ`, then `(1 / √ψ) ψ (1 / √ψ)`. Unstandardised `MANIFESTTRAITVAR` is defined for a zero trait; standardised `MANIFESTTRAITVAR` is not. Zero `MANIFESTTRAITVAR` skips forming `MANIFESTTRAITVARstd` in the 2017-era source and fails closed here. Indicator-level trait variance is an event-time structural quantity, so a non-event clock fails closed. `MANIFESTTRAITVAR` does not require stable `a < 0`. Distinct positive `ψ` recover the same 1. `trait / trait = 1` is `TRAITVARstd` and recovers the same number and remains a distinct named quantity. `θ` is `MANIFESTVAR` and is measurement error, not this correlation. Meredith (1993) remains unread (web search 2026-08-27T14:20Z: Springer/Cambridge Core paywalled; Unpaywall historically `is_oa: false`; Springer `content/pdf` is an HTML stub). Mislevy (1991, *Psychometrika, 56*, 177–196) remains unread on the same terms (DOI `10.1007/bf02294457`). Still not a Kalman filter, not a matrix `expm`, not ESEM estimation, not DSEM, and not ctsem estimation.

- `psychometric_core` recovers the Driver, Oud, and Voelkle (2017, Table 2, p. 12 `TRAITVAR`; §7.1, pp. 18–19; p. 16 `TRAITVARstd`; footnote 4; 2017-era ctsem `summary.ctsemFit.R`; JSS PDF re-opened 2026-08-26T17:45Z from https://www.jstatsoft.org/index.php/jss/article/download/v077i05/1104) scalar standardised trait variance on current main after `0ce16e8` dropped the pre-consolidation code while research notes already named the map (register items 81–82). Table 2 names `TRAITVAR` `φ_ξ` the latent trait variance/covariance and sets it `NULL` when there is no trait. Section 7.1 names traits the stable between-subject differences (unit-level unobserved heterogeneity). Page 16 prints standardised matrices with the suffix `std` when appropriate. The printed example on p. 16 is `discreteDRIFTstd`, not `TRAITVARstd`. Footnote 4 standardises using only the relevant variance, not the total. The relevant variance for that named between-subject correlation is `TRAITVAR`, not free first-occasion `T0VAR` and not process-dynamics `asymDIFFUSION`. The 2017-era source forms `TRAITVARstd` only when `TRAITVAR != 0`, as `solve(sqrt(diag(TRAITVAR))) %&% TRAITVAR` when `verbose = TRUE`. OpenMx `%&%` is `t(A) %*% B %*% A`. Unlike `T0VARstd`, that formation uses `diag(diag(TRAITVAR))` and does not add `diag(c(ridging))`. The ridge is a `T0VAR` numerical hack and is not this exact map. The scalar correlation is `trait / trait = 1` after strictly positive `TRAITVAR`. Form strictly positive `trait` first, then `1 / √trait`, then `(1 / √trait) trait (1 / √trait)`. Unstandardised `TRAITVAR` is defined for a zero trait; standardised `TRAITVAR` is not. Zero `TRAITVAR` skips forming `TRAITVARstd` in the 2017-era source and fails closed here. Between-subject variance is an event-time structural quantity, so a non-event clock fails closed. `TRAITVAR` does not require stable `a < 0`. Distinct positive `trait` recover the same 1. `p_0 / p_0 = 1` is `T0VARstd` and recovers the same number and remains a distinct named quantity. `t0_b² v` is `addedT0TIPREDVAR` and is extra first-occasion TI variance, not this correlation. Meredith (1993) remains unread (Unpaywall 2026-08-26T17:20Z: `is_oa: false`; OpenAlex closed; Springer `content/pdf` is an HTML stub). Mislevy (1991, *Psychometrika, 56*, 177–196) remains unread on the same terms (DOI `10.1007/bf02294457`; Unpaywall `is_oa: false`). Still not a Kalman filter, not a matrix `expm`, not ESEM estimation, not DSEM, and not ctsem estimation.
Expand Down
2 changes: 1 addition & 1 deletion CLAUDE.md

Large diffs are not rendered by default.

61 changes: 61 additions & 0 deletions crates/psychometric_core/src/error.rs
Original file line number Diff line number Diff line change
Expand Up @@ -710,6 +710,31 @@ pub enum PsychometricError {
/// `MANIFESTVARstd`. `λ² Var(η) + θ` is `Var(y)`, not the
/// correlation form of `Θ`.
ObservedVarianceIsNotStandardisedManifestVariance,

/// Driver Table 3 `T0TDPREDEFFECT` `t0_m` was treated as Table 2
/// `T0TDPREDCOV`. The coefficient is the first-occasion effect;
/// the covariance is `t0_m · v`. Equal numbers when `v = 1`
/// remain distinct named quantities.
InitialTimeDependentEffectIsNotInitialTimeDependentCovariance,
/// The analog extra first-occasion TD variance `t0_m² v` was
/// treated as Table 2 `T0TDPREDCOV`. That quadratic form is the
/// analog of `addedT0TIPREDVAR`; Table 2 names `T0TDPREDCOV` the
/// covariance, not that extra variance. Equal numbers when
/// `t0_m = 1` remain distinct named quantities. The 2017-era
/// source does not form `addedT0TDPREDVAR`.
InitialTimeDependentExtraVarianceIsNotInitialTimeDependentCovariance,
/// The first-occasion TI analog covariance `t0_b · v` was treated
/// as Table 2 `T0TDPREDCOV`. Table 3 names `T0TIPREDEFFECT` a
/// regression; Table 2 names `T0TDPREDCOV` the TD covariance.
/// Equal numbers when `t0_m = t0_b` remain distinct named
/// quantities.
InitialTimeIndependentCovarianceIsNotInitialTimeDependentCovariance,
/// Process `TDPREDEFFECT × TDPREDVAR` `m · v` was treated as
/// Table 2 `T0TDPREDCOV`. Table 2 / Table 3 name `TDPREDEFFECT`
/// `M` the process coefficient. `T0TDPREDCOV` is the first
/// occasion. Equal numbers when `t0_m = m` remain distinct
/// named quantities.
TimeDependentEffectCovarianceIsNotInitialTimeDependentCovariance,
}

impl fmt::Display for PsychometricError {
Expand Down Expand Up @@ -1235,6 +1260,18 @@ impl fmt::Display for PsychometricError {
Self::ObservedVarianceIsNotStandardisedManifestVariance => {
"observed-indicator variance is not standardised measurement-error variance"
}
Self::InitialTimeDependentEffectIsNotInitialTimeDependentCovariance => {
"first-occasion time-dependent predictor effect is not the first-occasion time-dependent predictor covariance"
}
Self::InitialTimeDependentExtraVarianceIsNotInitialTimeDependentCovariance => {
"first-occasion time-dependent extra predictor variance is not the first-occasion time-dependent predictor covariance"
}
Self::InitialTimeIndependentCovarianceIsNotInitialTimeDependentCovariance => {
"first-occasion time-independent predictor covariance is not the first-occasion time-dependent predictor covariance"
}
Self::TimeDependentEffectCovarianceIsNotInitialTimeDependentCovariance => {
"time-dependent predictor effect covariance is not the first-occasion time-dependent predictor covariance"
}
};
formatter.write_str(message)
}
Expand Down Expand Up @@ -2073,4 +2110,28 @@ mod tests {
"measurement error is not standardised manifest-trait variance"
);
}

#[test]
fn initial_time_dependent_covariance_boundary_messages_are_stable() {
assert_eq!(
PsychometricError::InitialTimeDependentEffectIsNotInitialTimeDependentCovariance
.to_string(),
"first-occasion time-dependent predictor effect is not the first-occasion time-dependent predictor covariance"
);
assert_eq!(
PsychometricError::InitialTimeDependentExtraVarianceIsNotInitialTimeDependentCovariance
.to_string(),
"first-occasion time-dependent extra predictor variance is not the first-occasion time-dependent predictor covariance"
);
assert_eq!(
PsychometricError::InitialTimeIndependentCovarianceIsNotInitialTimeDependentCovariance
.to_string(),
"first-occasion time-independent predictor covariance is not the first-occasion time-dependent predictor covariance"
);
assert_eq!(
PsychometricError::TimeDependentEffectCovarianceIsNotInitialTimeDependentCovariance
.to_string(),
"time-dependent predictor effect covariance is not the first-occasion time-dependent predictor covariance"
);
}
}
Loading
Loading