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Pull requests: Clinical-Genomics/cg

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Pull requests list

Fix existing sample check
#4354 opened Apr 22, 2025 by islean Loading…
15 tasks
3
Add nallo storing
#4350 opened Apr 17, 2025 by islean Loading…
15 tasks
1
19
Add nallo loqusdb upload nallo
#4344 opened Apr 16, 2025 by peterpru • Draft
1 of 15 tasks
1
Add validations for Nallo orders
#4342 opened Apr 15, 2025 by eliottBo Loading…
1 of 15 tasks
@eliottBo
80
Tag orders containing samples with external data samples with "external-data"
#4340 opened Apr 15, 2025 by mogmi Loading…
15 tasks
1
9
Add rule for resetting capture kit
#4331 opened Apr 8, 2025 by islean Loading…
15 tasks
7
RAREDISEASE & nf-analysis: change logic for skip_germlinevariant calling in config-case
#4330 opened Apr 8, 2025 by rannick Loading…
15 tasks
@rannick
3
feat: changes for balsamic submit
#4317 opened Mar 28, 2025 by mathiasbio • Draft
4 of 19 tasks
1
work in progress: FreshDesk CLI
#4290 opened Mar 14, 2025 by RasmusBurge-CG • Draft
15 tasks
1
add suport for sample sheets and params file
#4255 opened Feb 28, 2025 by diitaz93 • Draft
15 tasks
3
DEV - Start pipelines
#4227 opened Feb 19, 2025 by diitaz93 • Draft
15 tasks
1
1
add error handling to fastq clean
#4206 opened Feb 14, 2025 by diitaz93 Loading…
16 tasks
1
4
feat(keycloak authentication)
#4162 opened Jan 28, 2025 by ChrOertlin Loading…
15 tasks
1
14
Enable hidden analysis in TB to be uploaded
#4003 opened Dec 6, 2024 by eliottBo Loading…
1 of 15 tasks
1
@eliottBo
4
fetch tissue type from original sample
#3979 opened Nov 27, 2024 by rannick Loading…
15 tasks
6
Same-Day Archived Files to PDC Cannot Be Distinguished
#3857 opened Oct 17, 2024 by RasmusBurge-CG Loading…
15 tasks
1
4
feat(update): Pydantic model
#3828 opened Oct 10, 2024 by henrikstranneheim Loading…
1 of 15 tasks
@henrikstranneheim
8
reduce-log-level-compress
#3811 opened Oct 7, 2024 by Vince-janv Loading…
2
feat/connect order to Freshdesk ticket
#3620 opened Aug 21, 2024 by ahdamin • Draft
1
feat/add freshdesk properties
#3576 opened Aug 15, 2024 by ahdamin Loading…
4
Remove pandas from gsaid api
#3393 opened Jul 4, 2024 by henrikstranneheim Loading…
1 of 15 tasks
@henrikstranneheim
16
Rename archive location
#3289 opened May 27, 2024 by islean • Draft
15 tasks
@islean
1
Update use_read_count_threshold for taxprofiler
#3196 opened May 2, 2024 by sofstam Loading…
15 tasks
6
Update the lowest python version to 3.11 to include StrEnum
#3178 opened Apr 25, 2024 by samuell • Draft
12 tasks
1
Enum Example for PhenotypeStatus
#3065 opened Mar 22, 2024 by Vince-janv • Draft
15 tasks
1
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