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Pull requests: Clinical-Genomics/cg

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Pull requests list

Value sent to write_yaml should always be str and not StrEnum
#4637 opened Oct 2, 2025 by mogmi • Draft
15 tasks
1
Add loqusdb dump files
#4633 opened Oct 2, 2025 by diitaz93 • Draft
15 tasks
1
Fix log message typo in nf_analysis.py
#4625 opened Oct 1, 2025 by fellen31 Loading…
1 of 15 tasks
1
1
Align docstring for mip-dna command
#4614 opened Sep 18, 2025 by RasmusBurge-CG Loading…
15 tasks
2
Adding limit to Balsamic
#4606 opened Sep 15, 2025 by RasmusBurge-CG Loading…
15 tasks
2
(Pipeline integration) dev Refactor start MIP-DNA (#4538)
#4544 opened Aug 11, 2025 by mogmi Loading…
15 tasks
2
Show Pacbio run name and plate in sample sequencing metrics
#4542 opened Aug 7, 2025 by islean • Draft
15 tasks
1
1
Make RNAFUSION samples be always tumour
#4537 opened Aug 1, 2025 by diitaz93 • Draft
2 of 12 tasks
2
23
dev(Balsamic Start) Support starting Balsamic using AnalysisStarter
#4524 opened Jul 24, 2025 by Vince-janv Loading…
44
Filter cancelled Samples for Tomte dna upload
#4498 opened Jul 8, 2025 by ahdamin Loading…
15 tasks
1
chore: create LICENSE file
#4472 opened Jun 26, 2025 by pbiology Loading…
1 of 3 tasks
1
feat(Sequencing QC) Change logic for microSALT
#4467 opened Jun 25, 2025 by Vince-janv Loading…
1
2
DEV - Balsamic v18 changes
#4453 opened Jun 18, 2025 by mathiasbio Loading…
13 of 17 tasks
22
Rnafusion 4
#4385 opened May 7, 2025 by rannick • Draft
15 tasks
2
work in progress: FreshDesk CLI
#4290 opened Mar 14, 2025 by RasmusBurge-CG • Draft
15 tasks
1
feat(keycloak authentication)
#4162 opened Jan 28, 2025 by ChrOertlin Loading…
15 tasks
1
22
Enable hidden analysis in TB to be uploaded
#4003 opened Dec 6, 2024 by eliottBo Loading…
1 of 15 tasks
1
@eliottBo
4
fetch tissue type from original sample
#3979 opened Nov 27, 2024 by rannick Loading…
15 tasks
6
feat(update): Pydantic model
#3828 opened Oct 10, 2024 by henrikstranneheim Loading…
1 of 15 tasks
@henrikstranneheim
8
reduce-log-level-compress
#3811 opened Oct 7, 2024 by Vince-janv Loading…
2
feat/connect order to Freshdesk ticket
#3620 opened Aug 21, 2024 by ahdamin • Draft
1
feat/add freshdesk properties
#3576 opened Aug 15, 2024 by ahdamin Loading…
4
Remove pandas from gsaid api
#3393 opened Jul 4, 2024 by henrikstranneheim Loading…
1 of 15 tasks
@henrikstranneheim
16
Rename archive location
#3289 opened May 27, 2024 by islean • Draft
15 tasks
1
@islean
1
Update use_read_count_threshold for taxprofiler
#3196 opened May 2, 2024 by sofstam Loading…
15 tasks
6
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