Skip to content
@ChaissonLab

ChaissonLab

Popular repositories Loading

  1. LRA LRA Public

    Long read aligner

    C++ 113 8

  2. vamos vamos Public

    VNTR annotation using motif selection

    C 25 3

  3. danbing-tk danbing-tk Public

    Toolkit for VNTR genotyping and repeat-pan genome graph construction

    Python 21 3

  4. TT-Mars TT-Mars Public

    Structural Variants Assessment Based on Haplotype-resolved Assemblies

    Python 20 4

  5. hmcnc hmcnc Public

    Forked from redndgreen8/hmcnc

    Hidden Markov Model based Copy number caller

    C++ 20

  6. SegDupAnnotation SegDupAnnotation Public

    Python 7 2

Repositories

Showing 10 of 23 repositories
  • vamos Public

    VNTR annotation using motif selection

    ChaissonLab/vamos’s past year of commit activity
    C 25 GPL-2.0 3 7 1 Updated Jul 11, 2024
  • vamos-somatic Public

    A wdl file for generating per-read calls for tandem repeats in long-read data.

    ChaissonLab/vamos-somatic’s past year of commit activity
    WDL 0 0 0 0 Updated Jul 10, 2024
  • GTEx-tools Public

    Small tool-list for gtex

    ChaissonLab/GTEx-tools’s past year of commit activity
    C++ 0 0 0 0 Updated Jun 23, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    ChaissonLab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,161 0 0 Updated Jun 13, 2024
  • SegDupAnnotation2 Public

    Count gene duplications.

    ChaissonLab/SegDupAnnotation2’s past year of commit activity
    Python 2 1 0 0 Updated Jun 6, 2024
  • rare-var-scratch Public
    ChaissonLab/rare-var-scratch’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 1 Updated May 6, 2024
  • danbing-tk Public

    Toolkit for VNTR genotyping and repeat-pan genome graph construction

    ChaissonLab/danbing-tk’s past year of commit activity
    Python 21 BSD-3-Clause 3 7 1 Updated Apr 6, 2024
  • RepeatMasking Public

    A snakefile to run repeatmasker on genomes in a scatter/gather approach.

    ChaissonLab/RepeatMasking’s past year of commit activity
    Python 0 2 1 0 Updated Feb 2, 2024
  • CARD-VNTR Public

    Tandem repeat analysis for the CARD consortium

    ChaissonLab/CARD-VNTR’s past year of commit activity
    WDL 1 1 0 1 Updated Feb 2, 2024
  • hmcnc Public Forked from redndgreen8/hmcnc

    Hidden Markov Model based Copy number caller

    ChaissonLab/hmcnc’s past year of commit activity
    C++ 20 1 0 0 Updated Oct 12, 2023
View all repositories

Top languages

Loading…

Most used topics

Loading…