编译为动态库

.gitignore

@@ -12,3 +12,7 @@ docs/_build/*
 *.py[cod]
 build
 bld
+
+*.a
+*.so
+*.o

cmake/SetBuildOptions.cmake

@@ -23,6 +23,7 @@ endif()
 # Set compiler specific flags.
 if(COMPILER STREQUAL "GNU")
     add_compile_definitions(CPRGNU)
+    add_compile_options(-fallow-argument-mismatch -shared -fPIC)
     set(CMAKE_C_FLAGS "-std=gnu99 -fopenmp")
     set(CMAKE_C_FLAGS_DEBUG "-fcheck=bounds")
     set(CMAKE_C_FLAGS_RELEASE "-O")
@@ -62,4 +63,4 @@ message(STATUS " ******* ${CMAKE_PROJECT_NAME} build options ******* ")
 message(STATUS " Build type = '${CMAKE_BUILD_TYPE}'")
 message(STATUS " Compiler = '${COMPILER}'")
 message(STATUS " Coupling mode = '${COUPLING_MODE}'")
-message(STATUS " ********************************** ")
+message(STATUS " ********************************** ")

julia/build.sh

@@ -0,0 +1,4 @@
+gcc -c hello.c -o hello.o
+ar rcs libhello.a hello.o
+
+gcc -shared -o libhello.so -Wl,--whole-archive libhello.a -Wl,--no-whole-archive

julia/hello.c

@@ -0,0 +1,4 @@
+// Save this as example.c
+int add(int a, int b) {
+  return a + b;
+}

julia/hello.jl

@@ -0,0 +1,15 @@
+# Define the function signature and call it
+lib = "./libhello.so"
+
+function add(a::Int32, b::Int32)::Int32
+  return ccall(
+    (:add, lib),  # Function and static library path
+    Int32,                            # Return type
+    (Int32, Int32),                   # Argument types
+    a, b                              # Arguments
+  )
+end
+
+# Call the function
+result = add(Int32(3), Int32(5))
+println(result)

julia_call.jl

@@ -0,0 +1,27 @@
+# using NCDatasets
+
+lib = "bld/clm5/libclm.so"
+# lib = "bld/clm5/libclm.a"
+# real(r8) function daylength(lat, decl)
+const FT = Cdouble
+
+daylength(lat::FT, decl::FT) = 
+  @ccall lib.__daylengthmod_MOD_daylength(lat::Ref{FT}, decl::Ref{FT})::FT
+
+lat = 20.0 |> deg2rad
+decl = 20.0 |> deg2rad
+
+@show daylength(lat, decl)
+
+## Fix curl error
+# > /home/kong/packages/julias/julia-1.10/bin/../lib/julia/libcurl.so.4: version `CURL_OPENSSL_4' not found (required by /lib/x86_64-linux-gnu/libnetcdf.so.19)
+
+# /home/kong/packages/julias/julia-1.10/bin/../lib/julia/libcurl.so.4 -> libcurl.so.4.8.0
+# ll /home/kong/packages/julias/julia-1.10/lib/julia/libcurl.so.4
+
+# ln -sf /home/kong/packages/julias/julia-1.10/lib/julia/libcurl.so.4.8.0 /home/kong/packages/julias/julia-1.10/lib/julia/libcurl.so.4
+# ln -sf /usr/lib/x86_64-linux-gnu/libcurl.so.4.7.0 /home/kong/packages/julias/julia-1.10/lib/julia/libcurl.so.4
+
+
+## Julia
+# ln -sf libcurl.so.4.8.0 /home/kong/packages/julias/julia-1.10/lib/julia/libcurl.so.4

run.sh

@@ -0,0 +1,35 @@
+## 之前版本
+# export NETCDF=${HOME}/environment/netcdf
+# export PNDIR=${HOME}/environment/pnetcdf
+# export LD_LIBRARY_PATH="$NETCDF/lib:$PNDIR/lib"
+
+## github actions版本
+export NETCDF="/opt/netcdf_v4.9.2_openmpi"
+export PNDIR="$NETCDF"
+export LD_LIBRARY_PATH="$NETCDF/lib"
+
+# export PATH=$NETCDF/bin:$PATH
+# export NETCDF=$NETCDF
+export NETCDF_C_PATH=$NETCDF
+export NETCDF_FORTRAN_PATH=$NETCDF
+export PNETCDF_PATH=$PNDIR
+
+
+export CFLAGS="-fPIC -shared"
+export FFLAGS="-fPIC -shared"
+
+# User-specific variables
+BUILD_DIR="bld"
+INSTALL_DIR="eclm"
+
+mkdir bld
+
+# Run cmake
+cmake -S src -B "$BUILD_DIR" \
+      -DCMAKE_INSTALL_PREFIX="$INSTALL_DIR" \
+      -DCMAKE_C_COMPILER=mpicc \
+      -DCMAKE_Fortran_FLAGS="-fallow-argument-mismatch -fallow-invalid-boz -fPIC" \
+      -DCMAKE_Fortran_COMPILER=mpifort
+
+cd bld
+make -j8

src/clm5/CMakeLists.txt

@@ -1,6 +1,7 @@
 project (clm LANGUAGES Fortran)
 
-add_library(${PROJECT_NAME} STATIC)
+# add_library(${PROJECT_NAME} STATIC)
+add_library(${PROJECT_NAME} SHARED)
 
 target_compile_definitions(${PROJECT_NAME} PRIVATE NDEBUG)
 target_include_directories(${PROJECT_NAME} PUBLIC ${CMAKE_CURRENT_BINARY_DIR})
@@ -324,4 +325,4 @@ if(LAPACK_FOUND)
     target_link_libraries(${PROJECT_NAME} PRIVATE LAPACK::LAPACK)
 endif()
 target_link_libraries(${PROJECT_NAME} PRIVATE csm_share)
-install (TARGETS ${PROJECT_NAME} ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR})
+install (TARGETS ${PROJECT_NAME} ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR})

src/csm_share/CMakeLists.txt

@@ -1,6 +1,6 @@
 project (csm_share LANGUAGES C Fortran)
 
-add_library(${PROJECT_NAME} STATIC)
+add_library(${PROJECT_NAME} SHARED)
 
 # TODO: NUM_COMP_INST_<COMP> should be adjusted for ensemble runs. See the ff. for more info:
 # https://esmci.github.io/cime/versions/cesm2.2/html/users_guide/multi-instance.html

src/datm/CMakeLists.txt

@@ -1,6 +1,6 @@
 project (datm LANGUAGES Fortran)
 
-add_library(${PROJECT_NAME} STATIC)
+add_library(${PROJECT_NAME} SHARED)
 
 target_include_directories(${PROJECT_NAME} PUBLIC ${CMAKE_CURRENT_BINARY_DIR})
 target_link_directories(${PROJECT_NAME} PUBLIC ${CMAKE_CURRENT_BINARY_DIR})
@@ -12,4 +12,4 @@ target_sources(${PROJECT_NAME}
         atm_comp_mct.F90
 )
 target_link_libraries(${PROJECT_NAME} PRIVATE csm_share)
-install (TARGETS ${PROJECT_NAME} ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR})
+install (TARGETS ${PROJECT_NAME} ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR})

src/eclm/CMakeLists.txt

@@ -1,7 +1,7 @@
 project (eclm LANGUAGES Fortran)
 
 if(USE_PDAF)
-  add_library(${PROJECT_NAME} STATIC)
+  add_library(${PROJECT_NAME} SHARED)
 else()
   add_executable(${PROJECT_NAME})
   set_target_properties(${PROJECT_NAME} PROPERTIES SUFFIX ".exe")
@@ -39,4 +39,4 @@ target_sources(${PROJECT_NAME}
 )
 
 target_link_libraries(${PROJECT_NAME} PRIVATE clm datm mosart ocn wav ice glc esp csm_share)
-install (TARGETS ${PROJECT_NAME} ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR})
+install (TARGETS ${PROJECT_NAME} ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR})

src/externals/CMakeLists.txt

@@ -26,15 +26,15 @@ ExternalProject_Add(gptl_external
                       SHAREDPATH=${GPTL_BLD_DIR}
     INSTALL_COMMAND   ""
     BUILD_ALWAYS      YES
-    BUILD_BYPRODUCTS  ${GPTL_BLD_DIR}/lib/libgptl.a
+    BUILD_BYPRODUCTS  ${GPTL_BLD_DIR}/lib/libgptl.so
 )
 
 add_library(gptl INTERFACE IMPORTED GLOBAL)
 target_include_directories(gptl INTERFACE ${GPTL_BLD_DIR}/include)
 target_link_directories(gptl INTERFACE ${GPTL_BLD_DIR}/lib)
-target_link_libraries(gptl INTERFACE libgptl.a)
+target_link_libraries(gptl INTERFACE libgptl.so)
 add_dependencies(gptl gptl_external)
-install (FILES ${GPTL_BLD_DIR}/lib/libgptl.a TYPE LIB)
+install (FILES ${GPTL_BLD_DIR}/lib/libgptl.so TYPE LIB)
 
 
 # ===========
@@ -58,13 +58,13 @@ if (BUILD_MCT)
                         CFLAGS=${CMAKE_C_FLAGS}
                         FCFLAGS=${CMAKE_Fortran_FLAGS}
         BUILD_ALWAYS      YES
-        BUILD_BYPRODUCTS  ${GPTL_BLD_DIR}/lib/libmct.a ${GPTL_BLD_DIR}/lib/libmpeu.a
+        BUILD_BYPRODUCTS  ${GPTL_BLD_DIR}/lib/libmct.so ${GPTL_BLD_DIR}/lib/libmpeu.a
     )
     target_include_directories(mct INTERFACE ${MCT_BLD_DIR}/include)
     target_link_directories(mct INTERFACE ${MCT_BLD_DIR}/lib)
-    target_link_libraries(mct INTERFACE libmct.a libmpeu.a)
+    target_link_libraries(mct INTERFACE libmct.so libmpeu.a)
     add_dependencies(mct mct_external) 
-    install (FILES ${MCT_BLD_DIR}/lib/libmct.a ${MCT_BLD_DIR}/lib/libmpeu.a TYPE LIB)
+    install (FILES ${MCT_BLD_DIR}/lib/libmct.so ${MCT_BLD_DIR}/lib/libmpeu.a TYPE LIB)
 else()
     find_package(MCT REQUIRED)
     if (${MCT_FOUND})

src/externals/gptl/CMakeLists.txt

@@ -21,4 +21,4 @@ SET(SRCS_C  GPTLget_memusage.c
 SET(SRCS_F90  perf_mod.F90
               perf_utils.F90)
 
-ADD_LIBRARY(timing ${SRCS_F90} ${SRCS_C})
+ADD_LIBRARY(timing SHARED ${SRCS_F90} ${SRCS_C})

src/externals/gptl/Makefile

@@ -48,7 +48,10 @@ OBJS = gptl.o GPTLutil.o GPTLget_memusage.o GPTLprint_memusage.o \
 AR ?= ar
 ARFLAGS ?= ruv
 
-libgptl.a: $(OBJS)
+CFLAGS=-fPIC -shared
+FFLAGS=-fPIC -shared
+
+libgptl.so: $(OBJS)
 	$(AR) $(ARFLAGS) $@ $(OBJS)
 
 
@@ -69,10 +72,10 @@ clean:
 	$(RM) -f *.f *.f90 *.d *.$(MOD_SUFFIX) $(OBJS)
 
 
-install: libgptl.a
+install: libgptl.so
 	cp -p $(GPTL_DIR)/gptl.h $(SHAREDPATH)/include
 	cp -p *.$(MOD_SUFFIX) $(SHAREDPATH)/include
-	cp -p libgptl.a $(SHAREDPATH)/lib
+	cp -p libgptl.so $(SHAREDPATH)/lib
 
 
 perf_mod.o: perf_utils.o

src/externals/mct/benchmarks/Makefile

@@ -44,7 +44,7 @@ clean:
 
 # DEPENDENCIES:
 
-$(OBJS_ALL): $(MCTPATH)/libmct.a
+$(OBJS_ALL): $(MCTPATH)/libmct.so
 
 
 

src/externals/mct/configure

@@ -5482,7 +5482,7 @@ elif echo $ac_fc_version_output | grep -i sx >/dev/null 2>&1; then
 fi
 
 # Test to see if fortran compiler supports the flag
-# -fallow-argument-mismatch flag introduced in gfortran 10.
+# -fallow-argument-mismatch -shared -fPIC flag introduced in gfortran 10.
 #
 # Also allow support for NAG compiler using the -mismatch_all flag.
 #
@@ -5496,14 +5496,14 @@ Program test
 USE ISO_C_BINDING, ONLY: C_PTRDIFF_T
 End Program
 EOF
-doit='$FC -c ${FCFLAGS} ${FCFLAGS_f90} -fallow-argument-mismatch conftest.f90'
+doit='$FC -c ${FCFLAGS} ${FCFLAGS_f90} -fallow-argument-mismatch -shared -fPIC conftest.f90'
 if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$doit\""; } >&5
   (eval $doit) 2>&5
   ac_status=$?
   printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
   test $ac_status = 0; }; then
    nf_allow_mismatch=yes
-   FCFLAGS="${FCFLAGS} -fallow-argument-mismatch"
+   FCFLAGS="${FCFLAGS} -fallow-argument-mismatch -shared -fPIC"
   else
    nf_allow_mismatch=no
 fi

src/externals/mct/configure.ac

@@ -459,7 +459,7 @@ elif echo $ac_fc_version_output | grep -i sx >/dev/null 2>&1; then
 fi
 
 # Test to see if fortran compiler supports the flag
-# -fallow-argument-mismatch flag introduced in gfortran 10.
+# -fallow-argument-mismatch -shared -fPIC flag introduced in gfortran 10.
 #
 # Also allow support for NAG compiler using the -mismatch_all flag.
 #
@@ -472,10 +472,10 @@ Program test
 USE ISO_C_BINDING, ONLY: C_PTRDIFF_T
 End Program
 EOF
-doit='$FC -c ${FCFLAGS} ${FCFLAGS_f90} -fallow-argument-mismatch conftest.f90'
+doit='$FC -c ${FCFLAGS} ${FCFLAGS_f90} -fallow-argument-mismatch -shared -fPIC conftest.f90'
 if AC_TRY_EVAL(doit); then
    nf_allow_mismatch=yes
-   FCFLAGS="${FCFLAGS} -fallow-argument-mismatch"
+   FCFLAGS="${FCFLAGS} -fallow-argument-mismatch -shared -fPIC"
   else
    nf_allow_mismatch=no
 fi

src/externals/mct/examples/climate_concur1/Makefile

@@ -38,7 +38,7 @@ clean:
 
 # DEPENDENCIES:
 
-$(OBJS_ALL): $(MCTPATH)/libmct.a
+$(OBJS_ALL): $(MCTPATH)/libmct.so
 
 
 

src/externals/mct/examples/climate_sequen1/Makefile

@@ -37,7 +37,7 @@ clean:
 
 # DEPENDENCIES:
 
-$(OBJS_ALL): $(MCTPATH)/libmct.a
+$(OBJS_ALL): $(MCTPATH)/libmct.so
 
 
 

src/externals/mct/examples/simple/Makefile

@@ -50,4 +50,4 @@ clean:
 
 # DEPENDENCIES:
 
-$(OBJS_ALL): $(MCTPATH)/libmct.a
+$(OBJS_ALL): $(MCTPATH)/libmct.so

src/externals/mct/mct/Makefile

@@ -42,9 +42,9 @@ include ../Makefile.conf
 
 # TARGETS
 
-all: 	lib$(MODULE).a
+all: 	lib$(MODULE).so
 
-lib$(MODULE).a:	$(OBJS_ALL)
+lib$(MODULE).so:	$(OBJS_ALL)
 	$(RM) $@
 	$(AR) $@ $(OBJS_ALL)
 	$(RANLIB) $@
@@ -63,11 +63,11 @@ MCTFLAGS = $(INCFLAG)$(MPEUPATH)
 
 
 clean:
-	${RM} *.o *.mod lib$(MODULE).a
+	${RM} *.o *.mod lib$(MODULE).so
 
 install: all
 	$(MKINSTALLDIRS) $(libdir) $(includedir)
-	$(INSTALL) lib$(MODULE).a -m 644 $(libdir)
+	$(INSTALL) lib$(MODULE).so -m 644 $(libdir)
 	@for modfile in *.mod; do                         \
 	  echo $(INSTALL) $$modfile -m 644 $(includedir); \
 	  $(INSTALL) $$modfile -m 644 $(includedir);      \

src/externals/mct/mpeu/Makefile

@@ -48,9 +48,9 @@ OBJS_ALL	= $(SRCS_C:.c=.o)  \
 
 # TARGETS
 
-all:	lib$(MODULE).a
+all:	lib$(MODULE).so
 
-lib$(MODULE).a:	$(OBJS_ALL)
+lib$(MODULE).so:	$(OBJS_ALL)
 	$(RM) $@
 	$(AR) $@ $(OBJS_ALL)
 	$(RANLIB) $@
@@ -71,11 +71,11 @@ MPEUFLAGS =
 	$(FC) -c $(INCPATH) $(FPPDEFS) $(FCFLAGS) $(MPEUFLAGS) $<
 
 clean:
-	${RM} *.o *.mod lib$(MODULE).a
+	${RM} *.o *.mod lib$(MODULE).so
 
 install: all
 	$(MKINSTALLDIRS) $(libdir) $(includedir)
-	$(INSTALL) lib$(MODULE).a -m 644 $(libdir)
+	$(INSTALL) lib$(MODULE).so -m 644 $(libdir)
 	@for modfile in *.mod; do                         \
 	  echo $(INSTALL) $$modfile -m 644 $(includedir); \
 	  $(INSTALL) $$modfile -m 644 $(includedir);      \