fix: update precommit and dependencies

.github/workflows/test.yml

@@ -28,7 +28,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        python-version: [3.6, 3.9]
+        python-version: [3.7, 3.9]
         os: [ubuntu-latest]
     steps:
     - name: Checkout the repo

.pre-commit-config.yaml

@@ -3,7 +3,7 @@ fail_fast: false
 repos:
 
 -   repo: https://github.com/pre-commit/pre-commit-hooks.git
-    rev: v3.4.0
+    rev: v4.4.0
     hooks:
     -   id: trailing-whitespace
     -   id: end-of-file-fixer
@@ -17,23 +17,23 @@ repos:
     -   id: debug-statements
     -   id: check-merge-conflict
 
--   repo: 'https://gitlab.com/pycqa/flake8'
-    rev: 3.9.0
+-   repo: 'https://github.com/PyCQA/flake8'
+    rev: 5.0.4 # needed for py < 3.8.1
     hooks:
     -   id: flake8
 
 -   repo: 'https://github.com/ambv/black'
-    rev: 20.8b1
+    rev: 22.12.0
     hooks:
     -   id: black
         args: ['--safe']
 
--   repo: 'https://github.com/chewse/pre-commit-mirrors-pydocstyle'
-    rev: v2.1.1
+-   repo: https://github.com/pycqa/pydocstyle
+    rev: 6.1.1
     hooks:
     -   id: pydocstyle
 
 -   repo: https://github.com/pre-commit/mirrors-isort
-    rev: v5.7.0
+    rev: v5.10.1
     hooks:
     -   id: isort

eodag_cube/api/product/protobuf/__init__.py

@@ -16,3 +16,11 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 """EODAG product protobuf package"""
+import os
+
+# Fixes: descriptors cannot not be created directly.
+# If this call came from a _pb2.py file, your generated code is out of date and must be regenerated with protoc >= 3.19.0.
+# If you cannot immediately regenerate your protos, some other possible workarounds are:
+#  1. Downgrade the protobuf package to 3.20.x or lower.
+#  2. Set PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python (but this will use pure-Python parsing and will be much slower).
+os.environ["PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION"] = "python"

eodag_cube/rpc/protocol/__init__.py

@@ -16,3 +16,11 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 """EODAG rpc.protocol package"""
+import os
+
+# Fixes: descriptors cannot not be created directly.
+# If this call came from a _pb2.py file, your generated code is out of date and must be regenerated with protoc >= 3.19.0.
+# If you cannot immediately regenerate your protos, some other possible workarounds are:
+#  1. Downgrade the protobuf package to 3.20.x or lower.
+#  2. Set PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python (but this will use pure-Python parsing and will be much slower).
+os.environ["PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION"] = "python"

setup.py

@@ -27,7 +27,7 @@
         "eodag >= 2.3.2",
         "numpy",
         "rasterio",
-        "protobuf",
+        "protobuf <= 3.20",
         "grpcio",
         "xarray",
         "rioxarray",
@@ -37,7 +37,7 @@
             "flake8",
             "isort",
             "pre-commit",
-            "pytest==5.0.1",  # pytest pined to v5.0.1 to avoid issue when run from VSCode
+            "pytest",
             "pytest-cov",
             "tox",
             "nose",

tox.ini

@@ -19,10 +19,10 @@ commands =
     pytest --show-capture=no --cov --cov-fail-under=50
 
 [testenv:pypi]
-whitelist_externals = /bin/bash
+allowlist_externals = /bin/bash
 commands =
     # Check that the long description is ready to be published on PyPI without errors
-    bash -c 'ERROR=$(\{ python setup.py --long-description | rst2html.py >/dev/null;\} 2>&1) && if [[ ! -z $ERROR ]];'\
+    /bin/bash -c 'ERROR=$(\{ python setup.py --long-description | rst2html.py >/dev/null;\} 2>&1) && if [[ ! -z $ERROR ]];'\
     'then echo "README.rst is incompatible with PyPI reST renderer." && echo $ERROR && exit 1; fi'
 
 [testenv:linters]