asklepian

pip install azure-identity azure-storage-blob

You'll need to set your AZURE_END and AZURE_SAS as environment variables

conda env create -f environment.yml

Name		Name	Last commit message	Last commit date
Latest commit History 45 Commits
CHANGELOG.md		CHANGELOG.md
LICENSE		LICENSE
README.md		README.md
environment.yml		environment.yml
get_best_ref.py		get_best_ref.py
go.sh		go.sh
go_db.sh		go_db.sh
go_genome.sh		go_genome.sh
go_variant_v2.sh		go_variant_v2.sh
make_depth_table.py		make_depth_table.py
make_genomes_table_v2.py		make_genomes_table_v2.py
make_variants_table_v2.py		make_variants_table_v2.py
readfq.py		readfq.py
sqlite3.cmd		sqlite3.cmd
upload_azure.py		upload_azure.py

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