update gordon, conrad, onyx serial launch command

[apcraig]

PR checklist

• Short (1 sentence) summary of your PR:
  Update serial launch commands after PBS upgrade
• Developer(s):
  apcraig
• Suggest PR reviewers from list in the column to the right.
• Please copy the PR test results link or provide a summary of testing completed below.
  full test suite passes on conrad, gordon, onyx
• How much do the PR code changes differ from the unmodified code?
  • bit for bit
  • different at roundoff level
  • more substantial
• Does this PR create or have dependencies on Icepack or any other models?
  • Yes
  • No
• Does this PR add any new test cases?
  • Yes
  • No
• Is the documentation being updated? ("Documentation" includes information on the wiki or in the .rst files from doc/source/, which are used to create the online technical docs at https://readthedocs.org/projects/cice-consortium-cice/. A test build of the technical docs will be performed as part of the PR testing.)
  • Yes
  • No, does the documentation need to be updated at a later time?
    • Yes
    • No
• Please provide any additional information or relevant details below:

We were launching the serial cases with ./cice. As it turns out, this is not correct on Crays and uses shared resourced. We need to use ccmrun or aprun to launch to use the batch resources. Up to now, ./cice has been working. With the recent PBS upgrade on conrad, gordon, and onyx, we started to run into memory issues and core dumps. As a result, we have changed the launch to always use aprun, even for serial cases.