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V1.2.5 Update #99

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Nov 21, 2024
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2 changes: 1 addition & 1 deletion README.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,7 @@ github_pages_url <- description$GITHUB_PAGES

<p style="font-size: 16px;"><em>Public Database Submission Pipeline</em></p>

**Beta Version**: v1.2.4. This pipeline is currently in Beta testing, and issues could appear during submission. Please use it at your own risk. Feedback and suggestions are welcome!
**Beta Version**: v1.2.5. This pipeline is currently in Beta testing, and issues could appear during submission. Please use it at your own risk. Feedback and suggestions are welcome!

**General Disclaimer**: This repository was created for use by CDC programs to collaborate on public health related projects in support of the [CDC mission](https://www.cdc.gov/about/organization/mission.htm). GitHub is not hosted by the CDC, but is a third party website used by CDC and its partners to share information and collaborate on software. CDC use of GitHub does not imply an endorsement of any one particular service, product, or enterprise.

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2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@

</p>

**Beta Version**: 1.2.4. This pipeline is currently in Beta testing, and
**Beta Version**: 1.2.5. This pipeline is currently in Beta testing, and
issues could appear during submission. Please use it at your own risk.
Feedback and suggestions are welcome\!

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10 changes: 5 additions & 5 deletions config/seqsender/config_file/gisaid_schema.py
Original file line number Diff line number Diff line change
Expand Up @@ -10,19 +10,19 @@
'Username': {
'required': False,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+',
'regex': '\s*[\S]+\s*',
'nullable': True
},
'Password': {
'required': False,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+',
'regex': '\s*[\S]+\s*',
'nullable': True
},
'Spuid_Namespace': {
'required': False,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+',
'regex': '\s*[\S]+\s*',
'nullable': True
},
'BioSample_Package': {
Expand Down Expand Up @@ -191,12 +191,12 @@
'Username': {
'required': True,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+'
'regex': '\s*[\S]+\s*'
},
'Password': {
'required': True,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+'
'regex': '\s*[\S]+\s*'
},
'Submission_Position': {
'required': False,
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10 changes: 5 additions & 5 deletions config/seqsender/config_file/ncbi_gisaid_schema.py
Original file line number Diff line number Diff line change
Expand Up @@ -10,17 +10,17 @@
'Username': {
'required': True,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+'
'regex': '\s*[\S]+\s*'
},
'Password': {
'required': True,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+'
'regex': '\s*[\S]+\s*'
},
'Spuid_Namespace': {
'required': True,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+'
'regex': '\s*[\S]+\s*'
},
'BioSample_Package': {
'required': False,
Expand Down Expand Up @@ -173,12 +173,12 @@
'Username': {
'required': True,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+'
'regex': '\s*[\S]+\s*'
},
'Password': {
'required': True,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+'
'regex': '\s*[\S]+\s*'
},
'Submission_Position': {
'required': True,
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10 changes: 5 additions & 5 deletions config/seqsender/config_file/ncbi_schema.py
Original file line number Diff line number Diff line change
Expand Up @@ -10,17 +10,17 @@
'Username': {
'required': True,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+'
'regex': '\s*[\S]+\s*'
},
'Password': {
'required': True,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+'
'regex': '\s*[\S]+\s*'
},
'Spuid_Namespace': {
'required': True,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+'
'regex': '\s*[\S]+\s*'
},
'BioSample_Package': {
'required': False,
Expand Down Expand Up @@ -174,13 +174,13 @@
'Username': {
'required': False,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+',
'regex': '\s*[\S]+\s*',
'nullable': True
},
'Password': {
'required': False,
'type': 'string',
'regex': '^[a-zA-Z0-9_.+-]+',
'regex': '\s*[\S]+\s*',
'nullable': True
},
'Submission_Position': {
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2 changes: 1 addition & 1 deletion docs/app.json

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion shiny/app.py
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@
header = (
ui.card_header(
ui.HTML(
"""<p><strong>Beta Version</strong>: 1.2.4. This pipeline is currently in Beta testing, and issues could appear during submission. Please use it at your own risk. Feedback and suggestions are welcome!</p>"""
"""<p><strong>Beta Version</strong>: 1.2.5. This pipeline is currently in Beta testing, and issues could appear during submission. Please use it at your own risk. Feedback and suggestions are welcome!</p>"""
)
),
)
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