CDS 3.0.1

Release Notes - Cancer Data Service – Version CDS FE Version: 4.3.0

Build Details:

FE Version: 4.3.0.282

BE Version: 2.1.1.98

New Supported Features:

• Enable Google Analytics for the current CDS portal
• Update CRDC Helpdesk email
• File Selection and Cart Behavior
• "Library Strategy" Column Displays by Default in Files Tab on Data Explore Page

Data Releases:

• Data Release Version 12.0

Bug Fixes:

• Automation - Data Mismatch - Participant tab - Sample column
• Automation Error - Files tab - Participants & Samples value mismatch - UI vs DB
• Manifest File - Primary Diagnosis - Incorrect Spelling
• Number of participants and number of samples not returning files
• Program Detailed Page - Study Version in new tab not opening as expected.
• Study Listing Page - Study Version - On clicking back arrow not redirecting to the same listing page.
• Sample Type - Adding Files from Samples Tab - Incorrect notification (cart msg)
• Data Page -> Participants and Sample tab do not show data when gender is selected as "Not specified in data"
• Global Search Page -> Search result stat bar is not expanding (About page counts are overlapped)
• Study details page -> When a study name is long, it overlaps the purple ribbon
• Data Issue -> Duplicate checkboxes are appearing for "LIBRARY STRATEGY" and "LIBRARY SELECTION" facets

Known Bugs:

• File Cart -> For some studies user is not able to add less than 1000 files from Participants and Samples tab
• Data Issue -> Duplicate checkboxes are appearing for "Primary Diagnosis" facet
• Collapse View - the blue ribbon under the tabs does not run across the entire length of the table and is abruptly stopped
• Study details page - When a study name is long, the Explore Study Participants button hanging above purple ribbon

CDS 3.0.0

Release Notes - Cancer Data Service – Version CDS FE Version: 4.2.0

Build Details:

FE Version: 4.2.0.269

BE Version: 2.1.0.90

New Supported Features:

• CDS Transition to a central CRDC Data Submission and Data Discovery portals banner
• Direct Export Button to Cancer Genomics Cloud (CGC)
• Cart exporting manifest with all metadata to CGC
• Licenses visible in the cart for studies with licenses

Data Releases:

• Data Release Version 10

Bug Fixes:

• Files without samples linked to participants

Known Bugs:

• Sample Type - Adding Files from Samples Tab - Incorrect notification (cart msg)
• Donuts behavior on Dashboard
• Program Detailed Page - Study Version in new tab not opening as expected.
• Study Listing Page - Study Version - On clicking back arrow not redirecting to the same listing page.
• Manifest File - Primary Diagnosis - Incorrect Spelling

CDS 2.1.1

Release Notes - Cancer Data Service – Version CDS FE Version: 4.1.0

Build Details:

FE Version: 4.1.0.244

BE Version: 2.1.0.64

Hot Fix 2:

• Data model update to link participant to file when no samples are available
• Data release v9.0

CDS 2.1.0

Release Notes - Cancer Data Service – Version CDS FE Version: 4.0.0

Build Details

FE Version: 4.1.0.231

BE Version: 2.1.0.52

New Supported Features

• Updated search categories by:

• Demographics

• Study

• Samples

• Sequencing

• Imaging

• Diagnosis

• Files

• Added two donut visualizations for Image modality and sample type

• Table on data column show and hide feature expanded with more elements

• Participants

• Study Name

• Accession

• Gender

• Samples

• Race

• Ethnicity

• Primary Diagnosis

• Samples

• Participant ID

• Study Name

• Accession

• Tumor

• Analyte Type

• Files

• Sample Type

• Sample Tumor Status

• Organ or Tissue

• Files

• Study Name

• Accession

• Participant ID

• Sample ID

• File Type

• File Size

• Study Data Type

• Library Strategy

• Image Modality

• Studies details – added study versions

• Program details – added study versions

Data Model

• Updated the data model to accommodate imaging data for:
• HTAN – phs002371_image
• CHoP – phs002517
• Updated open search queries to accommodate imaging data
• Additional studies added

New integration

• Imaging data model now supported on CDS

Bug Fixes

• Files filtered out due to sample IDs not present

Known Bugs

• Files without samples not linked to participant
• Sample Type Donut - displays multiple filters upon selecting a Single filter

CDS 2.0.0

Release Notes - Cancer Data Service – Version CDS FE Version: 4.0.0

Build Details

FE Version: 4.0.0.194

BE Version: 2.0.0.24

New Supported Features

• Data page column show and hide feature for metadata
• Side bar categorized by Study, Sample, and Files
• Updated color schema on widgets
• Local find upgrade
• Enhanced Global search​ across elements
• Updates on data filters to build cohorts
• Download DRS manifest​ to upload directly to GCC for analysis
• Table on data column show and hide feature

Data Model

• Updated the data model to accommodate the many-to-many relationships of data elements for phs003155.v1.p1
• Updated open search queries to accommodate
• Additional studies added

New integration

• Aggregated data model now supported

Bug Fixes

• Sliders updated show min and max values for studies selected
• Rows Per Page - 100 space narrowing
• Study Detailed Page - No.of.Files/No.of.Participants displays as text instead of number
• Study Listing Page - No.of.Files/No.of.Participants displays as text instead of number
• Empty Error Pop-Up When Attempting to Add More Than 1000 Files to the Cart
• Missing MD5sum in Manifest File for files downloaded from Cart for some of the studies
• Application crashes when expanding “Num of Study Samples” facet with empty data
• Stat Bar count mismatch on the Num of Study Participants/Num of study Samples filters

Known Bugs

• Data dashboard participants and samples files querying all files on manifest
• Footer – GraphQL to be moved to “About CDS” Category

CDS Data Release

**Release notes --Cancer Data Service
Build Details:

FE Version: 3.0.4.162
BE Version: 24.6.1.148

Hot Fix

• Update queries to load larger studies

CDS 1.0.1

CDS Bug Release

**Release notes -- Cancer Data Service -- 1.0.1

Build Details:

FE Version: 3.0.2.142

BE Version: 24.6.1.97

Bug Fixes:

• CDS New Questionnaire Link still points to the old link.

• About Page - NCI's Cloud Services

• About Page - Incorrect Spelling

• Study Detail Page - Sorting not working as expected in "Null' Cases.

• The file count for study phs002790 is incorrect in the "STUDIES" page

• Study Access not showing on the cart page

• Participants counts mismatch between DB , UI is failing the automation scripts for Library Layout Filter

• Automation Error  - Sample Tumor Filter - Stat Bar - Data Mismatch

• Automation Error - Reference Genome Assembly - Stat bar Mismatch

• Automation Error  - Library Strategy Filter - Stat Bar - Data Mismatch

• Automation Error  - Study Filter - Stat Bar - Data Mismatch

• Automation :Data page->Library Source->Participants tab/Stat bar-UI counts are not matching with  Neo4j data.

• Gender Filter - Stat Bar - Data Mismatch - Automation Error

• When reaching the Data page, through Study participants link from the Study detail page, the stat bar shows an intermittent value before settling with the final counts

• Home Page - CRDC Link Should open in separate tab 

• Mismatch in the button name (label) quoted in the file centric cart vs the actual label displayed on the download manifest button.

• Seven Bridges Genomics account link in the cart page does not open in a new tab.

• Outbound website icon appears for most of the links

• CDS favicon is missing from the titlebar

• Broken image

• Footer - CRDC Link displays 404 error

• Stat bar Data Mismatch- Automation - Experimental Strategy-Amplicon

• Sliders - Alignment is not proper when selected any Study Filter

• Study Detail Page - Study showing wrong Participants count when we redirect to Data page from Study Detail Page

• Data Mismatch Error - Automation - PHS Accession

• Accessing and Analyzing Data - url exposed and not linking

• About how to submit data - directions included in the code

• Text changes - About CDS Data Model - Links exposed

• LCCC - phs001713 showing more file in the UI than in the actual data

• Programs Page - StatBar - Files count Mismatch

• Update about pages

• CDS uploaded data to be tested

• The upload case set pop-up window should not keep identifiers when user clicks on CANCEL button

• Sort tooltip hides the text

CDS 1.0.0

Release Notes – Cancer Data Service (CDS) – 1.0.0

Frontend Version: 3.0.1.133

Backend Version: 24.6.1.80

New Supported Features: 

• Data stats bar linking to pages (Studies, Participants, Samples, Files)
• Added and updated stat bar icons
• Online submission form
• Annotated studies to show access level

New Content:

• CDS New Request Questionnaire
• Static release notes
• NCI Cloud Resource page
• Accessing and Analyzing data page
• CDS User Guide

Data model:

• Nine more studies added
• Primary diagnosis field cleaned up

Bug fixes:

• Updated text on home page
• Updated text on about pages
• Updated link direction on home pages
• Added more donuts (facets)
• Updated search on data page to CDS-centric participant information (Info Icon on for uploading a file with Participant Ids shows wrong info)
• Messages showing up for multiple Info Icons need updates (Download Manifest, Add Selected Files etc)
• Add Selected Files button changes color when you click Files Tab
• Values in 'Samples' column for few studies are too long and distort the table view. Need to wrap text
• Home page: Under “Studies” tile, it says a user can view summaries of the studies within CDS but there are no summaries. Just study listings (as indicated in the call to action box below the tile)
• Faceted Search -study participants: the smallest study has 188 participants so the minimum should reflect this in the bar.
• Faceted search bar: Study names under faceted search should generally follow the same format e.g. Acronym then full name – so reader can easily skim the information.
• Studies tab: “Study description” is not filled out for any studies but would be very helpful
• About CDS tab: Suggest spelling out acronyms for studies (HTAN, CCDI…) since many users won’t know what these are. Maybe even provide hyperlinks to those study pages.
• About CDS tab: Suggest adding link to CDS Helpdesk here to make it more visible and easier to find.
• The slider does not clear when hitting the “clear all filtered selections
• ‘Explore CDS Data’ link out -> more noticeable
• No phs accession IDs are listed under ‘PHS ACCESSION’ when a study is selected
• Updated file limit from 1000 to 6000
• “upload participant set” button, the text box to explain the expected delimiter, as it seems that either commas or returns work.
• The md5sum values are missing in the manifest

CDS MVP release

CDS Bento MVP Release
FE Version: 2.0.0.65
BE Version: 24.6.0.48

Home  

• Access Data, Programs, Studies, and About from the Home page 
• Access to cart page 
• Explore CDS Data – renders data dashboard 
• EXPLORE renders the About CDS 
• Global Search across CDS 
• Statistics about Studies, Participants, Samples, and Files in CDS 
• Initial load and top link bar that navigates to CRDC

Data dashboard 

• Sorting of table-based model filtering options 
• Filtering by Study, Experimental Strategy, Gender, Tumor, and File type
• Download of a manifest file on cart page 
• Filtering of facet-based model for Experimental strategy, Gender, Tumor 
• Table can be filtered by Participants, Samples, and File 
• Participant file upload and information display on facet 
• Ability to add the selected cases/samples files to cart

Programs 

• List of all programs  
• Number of studies in each program 
• Each program has a program details pages with information 

Studies 

• Lists all the studies in CDS 
• Table sort  
• Accession renders Study details page 
• Study information 
• Sortable Study Data table  
• File selection feature to add to cart for manifest download 

About 

• About CDS 

  • Overview of the scope of CDS 

• About CRDC

  • Information on CRDC and all the Cloud resources available in CRDC 

• How To Submit Data

  • Provide CDS help through the CDS Help Desk 
  • CDS submission Guide 
  • Submission Questionnaire 
  • Current CDS metadata Template 
  • Link to CDS Explorer in Seven Bridges 

• About CDS Data Model 

  • Information about the CDS data model and links in GitHub 
  • Link to the Core data model 
  • Link to how to generate metadata manifests 
  • Link to processing CDS metadata manifest to SRA 

• GraphQL

  • Instructions on how to run GraphQL simple queries 

• Bento Framework

  • Information about Bento and contact details 

Footer

• National Cancer Institute – renders the cancer.gov (https://www.cancer.gov/) home page in a new tab (external from CDS)
• About CDS
  • CDS - renders About CDS (https://cds-qa.datacommons.cancer.gov/#/cancerDataService)
  • CRDC - renders the About CRDC page (https://cds-qa.datacommons.cancer.gov/#/crdc)
  • How to Submit Data - renders the About How to Submit Data Page (https://cds-qa.datacommons.cancer.gov/#/submit)
• Resources
  • CDS Data Model - renders the CDS resources page with the data model (https://cds-qa.datacommons.cancer.gov/#/resources)
  • GraphQL - renders the GraphQL page (https://cds-qa.datacommons.cancer.gov/#/graphql)
  • Bento - renders the Bento page (https://cds-qa.datacommons.cancer.gov/#/bento)
• More Information (- all the pages under disclaimer should open in a new as they out external from CDS Bento
  • Policies - renders the cancer.gov policies page (https://www.cancer.gov/policies)
  • Disclaimer – renders declaimer page in cancer.gov/ policy page (https://www.cancer.gov/policies/disclaimer)
  • Accessibility – renders the accessibility page on the cancer.gov policy page (https://www.cancer.gov/policies/accessibility)
• FOIA – renders the Freedom of Information Act page on the cancer.gov policy page (https://www.cancer.gov/policies/foia)
• HHS Vulnerability Disclosure renders the HHS.gov vulnerability and disclosure page (https://www.hhs.gov/vulnerability-disclosure-policy/index.html)
• U.S. Department of Health and Human Services – hhs.gov home page (https://www.hhs.gov/)
• National Institutes of Health – nih.gov home page (https://www.nih.gov/)
• National Cancer Institute - cancer.gov home page (https://www.cancer.gov/)
• USA.gov – usa.gov homepage (https://www.usa.gov/)