NCIRASPathway: an R package that converts image pathway to degital pathway

Installation

library(devtools)
install_github("CBIIT-CGBB/NCIRASPathway")

Introduction

raw pathway image -> coordinators of image -> generation of digital tables -> digital pathway plot

R codes for grid
R codes for digital pathway plot

Examples

Map gene information on the pathway

R codes

Map gene mutations on the pathway

R codes

Map gene associations on the pathway

R codes

Map gene associations and mutations on the pathway

R codes

Sub-networks in the pathway

R codes