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@nkemnitz nkemnitz commented Sep 3, 2023

Proposed changes:

  • only set self._affinities and self._areas if they are not provided
  • np.array( will only create copies if necessary (e.g. because the data type is not what it should be)

The second one might be a bit risky? Depending on what the original, intended behavior was: the default behavior for np.array in __init__ is to always create a copy, but the current setters are only updating the reference

@nkemnitz nkemnitz requested a review from akhileshh September 3, 2023 21:15
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Wasn't aware of the numpy.array's copy argument, thanks!

@akhileshh akhileshh merged commit 6484f41 into CAVEconnectome:main Sep 5, 2023
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nkemnitz commented Sep 6, 2023

Oh, there is also np.asarray which does the same and avoids copies by default

@nkemnitz nkemnitz deleted the zetta-avoid-copy branch September 6, 2023 08:27
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2 participants