Code

feat: Clump#211

Code

Merged

mlamkin7 merged 26 commits intomainCAST-genomics/haptools:mainfrom feat/clumpCAST-genomics/haptools:feat/clumpCopy head branch name to clipboardMay 2, 2023

+1,447-1

Commits

Commits on Jan 31, 2023

• Fixed docs and logic in simgenotype

  mlamkin7

  committed
  1455887

• Updated formatting

  mlamkin7

  committed
  91aa7cc

Commits on Feb 8, 2023

• Merge branch 'main' of https://github.com/CAST-genomics/haptools into feat/clump

  mlamkin7

  committed
  84f3938

• Added new subcommand clump

  mlamkin7

  committed
  e3f6160

Commits on Feb 16, 2023

• Preliminary clump updates for SNPs

  mlamkin7

  committed
  eee218e

Commits on Feb 23, 2023

• Interim updates

  mlamkin7

  committed
  fc979b4

• Merge branch 'main' of https://github.com/CAST-genomics/haptools into feat/clump

  mlamkin7

  committed
  a11a6e3

Commits on Feb 28, 2023

• Completed SNP clumping

  mlamkin7

  committed
  12de9b0

Commits on Mar 6, 2023

• SNPs completed

  mlamkin7

  committed
  2b29939

Commits on Mar 15, 2023

• Completed SNP clumping for MLS and pearson R

  mlamkin7

  committed
  708c470

• Merge branch 'main' of https://github.com/CAST-genomics/haptools into feat/clump

  mlamkin7

  committed
  276572c

Commits on Mar 20, 2023

• Clump STR implementation

  mlamkin7

  committed
  27fef95

• Merge branch 'main' of https://github.com/CAST-genomics/haptools into feat/clump

  mlamkin7

  committed
  0875e72

• Changed MLS solution to exact solution

  mlamkin7

  committed
  0da6c79

Commits on Mar 22, 2023

• Fixed comments

  mlamkin7

  committed
  6ce082c

• Merge branch 'main' of https://github.com/CAST-genomics/haptools into feat/clump

  mlamkin7

  committed
  dc224e7

Commits on Mar 27, 2023

• Merge branch 'main' of https://github.com/CAST-genomics/haptools into feat/clump

  mlamkin7

  committed
  dd561db

Commits on Apr 3, 2023

• Merge branch 'main' of https://github.com/CAST-genomics/haptools into feat/clump

  mlamkin7

  committed
  8fdfa3b

Commits on Apr 25, 2023

• Merged simphenotypeTR

  mlamkin7

  committed
  d9ba53f

Commits on May 2, 2023

• Completed Tests

  mlamkin7

  committed
  46a6264

• Removed extraneous debug message

  mlamkin7

  committed
  fd91011

• Added clump to Docs

  mlamkin7

  committed
  6c62b75

• Removed debug line in docs

  mlamkin7

  committed
  684b5b3

• Fixed Black formatting

  mlamkin7

  committed
  53bad78

• Removed scipy and used numpy instead

  mlamkin7

  committed
  852a435

• Added clump to toctree

  mlamkin7

  committed
  9d84d91