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feat: Clump #211

Merged
merged 26 commits into from
May 2, 2023
Merged

feat: Clump #211

merged 26 commits into from
May 2, 2023

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mlamkin7
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@mlamkin7 mlamkin7 commented May 2, 2023

We've addded a new subcommand clump. Clump operates similar to Plink's --clump option except our version can accommodate tandem repeats such as STRs.

Example Usage:

haptools clump \
  --summstats-snps tests/data/test_snpstats.linear \
  --gts-snps tests/data/simple.vcf \
  --clump-id-field ID \
  --clump-chrom-field CHROM \
  --clump-pos-field POS \
  --out test_snps.clump

@mlamkin7 mlamkin7 merged commit 3740ec1 into main May 2, 2023
@mlamkin7 mlamkin7 deleted the feat/clump branch May 2, 2023 18:33
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