fix: pin numpy to ensure a recent version of numpy (#151)

CAST-genomics · Dec 23, 2022 · 7c84a45 · 7c84a45
1 parent f61f613
commit 7c84a45
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Showing 3 changed files with 55 additions and 53 deletions.
diff --git a/haptools/data/haplotypes.py b/haptools/data/haplotypes.py
@@ -1017,7 +1017,7 @@ def to_str(self, sort: bool = True) -> Generator[str, None, None]:
         for symbol, line_instance in self.types.items():
             extras_order = line_instance.extras_order()
             if extras_order:
-                yield f"#\torder{symbol}\t" + "\t".join(line_instance.extras_order())
+                yield f"#\torder{symbol}\t" + "\t".join(extras_order)
         yield "#\tversion\t" + self.version
         for line_instance in self.types.values():
             yield from sorted(line_instance.extras_head())

diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -10,6 +10,7 @@ documentation = "https://haptools.readthedocs.io"
 
 [tool.poetry.dependencies]
 python = ">=3.7,<3.11"
+numpy = ">=1.20.0"
 click = ">=8.0.3"
 pysam = ">=0.19.0"
 cyvcf2 = ">=0.30.14"