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  • Homepage of BioX Lab at Nankai University.

    CSS MIT License Updated Mar 19, 2025
  • MethAgingDB Public

    A comprehensive DNA methylation database for aging biology

    R 1 MIT License Updated Feb 27, 2025
  • Fountain Public

    Rigorous integration of single-cell ATAC-seq data using regularized barycentric mapping

    Jupyter Notebook 1 1 MIT License Updated Feb 26, 2025
  • cpDistiller Public

    Triple-effect correction for Cell Painting data with contrastive and domain-adversarial learning

    Python MIT License Updated Feb 10, 2025
  • scCASdb Public

    Facilitating single-cell chromatin accessibility research with a user-friendly database

    MIT License Updated Dec 21, 2024
  • MINGLE Public

    A mutual information-based interpretable framework for automatic cell type annotation in single-cell chromatin accessibility data

    Python MIT License Updated Dec 14, 2024
  • ContrastGCN Public

    An interpretable ensemble framework for automatic cell type annotation in single-cell chromatin accessibility data

    Python MIT License Updated Dec 3, 2024
  • scBackdoor Public

    Backdoor attacks in single-cell pretrained models

    Python 32 1 MIT License Updated Nov 30, 2024
  • MultiKano Public

    MultiKano: an automatic cell type annotation tool for single-cell multi-omics data based on Kolmogorov-Arnold network and data augmentation

    Python 2 MIT License Updated Oct 18, 2024
  • CSFeatures Public

    Identification of cell type-specific differential features in single-cell and spatial omics data

    Jupyter Notebook 2 MIT License Updated Sep 29, 2024
  • scButterfly Public

    A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders

    Python 17 5 MIT License Updated Jul 1, 2024
  • scCrab Public

    A reference-guided cancer cell identification method based on Bayesian neural networks

    Jupyter Notebook 1 MIT License Updated May 23, 2024
  • Source codes for the reproduction of scButterfly

    Jupyter Notebook 7 1 MIT License Updated Mar 18, 2024
  • EpiCarousel Public

    Memory- and time-efficient identification of metacells for atlas-level single-cell chromatin accessibility data

    Python 3 MIT License Updated Mar 7, 2024
  • scCASE Public

    Accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data

    Jupyter Notebook 3 MIT License Updated Jan 4, 2024
  • RAINBOW Public

    Accurate cell type annotation for single-cell chromatin accessibility data via contrastive learning and reference guidance

    Python MIT License Updated May 7, 2023
  • CASCADE Public

    Accurate Annotation for Differentiating and Imbalanced Cell Types in Single-cell Chromatin Accessibility Data

    Python MIT License Updated Feb 22, 2023
  • SINFONIA Public

    scalable identification of spatially variable genes for deciphering spatial domains

    Python 8 2 MIT License Updated Jan 28, 2023
  • The reproducibility of ASTER

    Python MIT License Updated Dec 4, 2022
  • ASTER Public

    ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data

    Python 5 1 MIT License Updated Dec 4, 2022