This is the repository for scripts used in Nicolet et al., 2021 ( https://doi.org/10.1101/2021.02.10.430576 ).

We used Seurat ( https://github.com/satijalab/seurat ) for the analysis of single-cell RNA-seq of CD4+ T cells expressing CD29.

Please refer to the methods section of our manuscript (https://github.com/satijalab/seurat) for further details.