Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

update to incorporate pathogen-profiler fix #38

Merged
merged 7 commits into from
Jul 2, 2024

Conversation

taranewman
Copy link
Member

Fixes #37

(Not to merge until patch released)

@taranewman taranewman requested a review from dfornika April 30, 2024 17:45
@dfornika dfornika self-requested a review June 26, 2024 16:06
- qualimap=2.2.2d
- pathogen-profiler=4.2.0
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I don't think we need to pin pathogen-profiler here. It's pinned in the biocond recipe for tb-profiler:

https://github.com/bioconda/bioconda-recipes/blob/d9b5822dee1b488a893ee7c4f6188983ef89e026/recipes/tb-profiler/meta.yaml#L31

@dfornika dfornika self-requested a review July 2, 2024 16:51
Copy link
Member

@dfornika dfornika left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks good!

@dfornika dfornika merged commit 491811e into main Jul 2, 2024
2 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Issue with Pathogen Profiler combine_vcf_variants.py script
2 participants