Updated test data.

B-UMMI · Feb 20, 2024 · 538bf2e · 538bf2e
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Showing 11 changed files with 10 additions and 10 deletions.
diff --git a/CHEWBBACA/tests/data/createschema_data/expected_results/schema_seed/.genes_list b/CHEWBBACA/tests/data/createschema_data/expected_results/schema_seed/.genes_list
diff --git a/CHEWBBACA/tests/data/createschema_data/expected_results/schema_seed/.schema_config b/CHEWBBACA/tests/data/createschema_data/expected_results/schema_seed/.schema_config
diff --git a/...tests/data/createschema_data/expected_results/schema_seed/GCA-000007265-protein1208.fasta b/...tests/data/createschema_data/expected_results/schema_seed/GCA-000007265-protein1208.fasta
diff --git a/...tests/data/createschema_data/expected_results/schema_seed/GCA-000007265-protein1312.fasta b/...tests/data/createschema_data/expected_results/schema_seed/GCA-000007265-protein1312.fasta
diff --git a/.../tests/data/createschema_data/expected_results/schema_seed/GCA-000007265-protein495.fasta b/.../tests/data/createschema_data/expected_results/schema_seed/GCA-000007265-protein495.fasta
@@ -0,0 +1,2 @@
+>GCA-000007265-protein495_1
+ATGGCGCTTAAAGAATTAACAGCTAAAGAGTTCGAAAGTTATTCAGGAAATTACGATTTACAATCGTTTATGCAAACCCCTGAGATGGCAAAGCTTCTAAAAAAACGTGGGTATGACATTACCTACATGGGCTACCAAATCGATGGGAAAATGGAAATCATCAGTATTGTTTATACCATCCCAATGACTGGTGGACTTCATATGGAAGTCAATTCTGGTCCAGCCCATTCCAATTCTAAATATCTGAAACATTTTTATAAAGAACTACAGAACTATGCCAAATCTCAGGGCGCTTTAGAATTATTAATTAAACCTTATGATACCTACCAAGAGTTTACTGGTGAAGGTAAGCCTAAAGGTGCACCGAACACCTATCTTATTGATGACCTGACTAGTATAGGTTATCACCACGATGGGCTTCATATTGGTTATCCTGGCGGTGAACCTGATTGGCATTATGTTAAAAATCTAGAAGGTATCACTCCTCAAAATCTTCTTAAATCTTTCTCTAAAAAAGGACGCCCCTTGGTTAAAAAAGCCATGTCTTTTGGTATAAAAATACGTGTCCTCAAGCGGGAAGAACTACATATCTTTAAGGATATTACTTCTTCTACTTCTGATCGCCGGGACTATATGGATAAATCTCTAGATTATTATCAAGATTTTTATGATAGTTTCGGAGATAAGGCGGAATTTGTCATTGCAACTCTAAACTTTAGGGAATATGATCATAACCTACAATTAAATGCAAAGAAATTGGAAGAACAGATTACAGTCCTTGATAATCGCCATCAAAATAATACAGATTCTGCCAAATACCATCGTCAACGTACTGAGCTTGTCAATCAACTAGCTAGTTTAGATAAACGTCGCAAAGAAGTCGAACCTTTTATTCAAAAATTTGGAAATCAAGATGTTGTTTTAGCTGGTAGCCTCTTTATTTATAGCCCGAAAGAAACTGTCTATCTTTTCTCTGGCTCATACACAGAATTTAATAAATTTTATGCGCCTGCAGTTCTTCAAGAATATGTTATGCAAGAGGCTTTAAAGCGTCAATCAACTTTCTATAATTTTTTAGGTATTCAAGGAAATTTTGATGGTTCAGATGGCGTACTTCGCTTTAAACAGAATTTTAATGGTTACATTGTTCGTAAAATGGGTACTTTCCGCTACTATCCAAATCCATTAAAATATAAGAGTATTCAATTACTAAAGAAAATCTTACGCCGAACATAA
diff --git a/.../tests/data/createschema_data/expected_results/schema_seed/GCA-000007265-protein625.fasta b/.../tests/data/createschema_data/expected_results/schema_seed/GCA-000007265-protein625.fasta
@@ -0,0 +1,2 @@
+>GCA-000007265-protein625_1
+ATGTCAACATTTAAACGCTATGATGAAGAATTCAAACAATCTCTTGTTAACCTTTATCAAACTGGAAAAACTCAGTCTGAACTCTGTAAAGACTATAGGGTATCCACTTCTGCGCTTGCAAAATGGATCAAACAGTACTCTCAATTCAAACTCGAAGATAATTCTGTACTTACTGCCAAGCAAATACAAGAGTTACAAAAACGTAATGCGCAGCTTGAAGAGGAGAACCTTATCCTAAAAAAAGCAAGTGCCATATTCATGCAAAACTTAAAGTAA
diff --git a/...reateschema_data/expected_results/schema_seed/short/GCA-000007265-protein1208_short.fasta b/...reateschema_data/expected_results/schema_seed/short/GCA-000007265-protein1208_short.fasta
diff --git a/...reateschema_data/expected_results/schema_seed/short/GCA-000007265-protein1312_short.fasta b/...reateschema_data/expected_results/schema_seed/short/GCA-000007265-protein1312_short.fasta
diff --git a/...createschema_data/expected_results/schema_seed/short/GCA-000007265-protein495_short.fasta b/...createschema_data/expected_results/schema_seed/short/GCA-000007265-protein495_short.fasta
@@ -0,0 +1,2 @@
+>GCA-000007265-protein495_1
+ATGGCGCTTAAAGAATTAACAGCTAAAGAGTTCGAAAGTTATTCAGGAAATTACGATTTACAATCGTTTATGCAAACCCCTGAGATGGCAAAGCTTCTAAAAAAACGTGGGTATGACATTACCTACATGGGCTACCAAATCGATGGGAAAATGGAAATCATCAGTATTGTTTATACCATCCCAATGACTGGTGGACTTCATATGGAAGTCAATTCTGGTCCAGCCCATTCCAATTCTAAATATCTGAAACATTTTTATAAAGAACTACAGAACTATGCCAAATCTCAGGGCGCTTTAGAATTATTAATTAAACCTTATGATACCTACCAAGAGTTTACTGGTGAAGGTAAGCCTAAAGGTGCACCGAACACCTATCTTATTGATGACCTGACTAGTATAGGTTATCACCACGATGGGCTTCATATTGGTTATCCTGGCGGTGAACCTGATTGGCATTATGTTAAAAATCTAGAAGGTATCACTCCTCAAAATCTTCTTAAATCTTTCTCTAAAAAAGGACGCCCCTTGGTTAAAAAAGCCATGTCTTTTGGTATAAAAATACGTGTCCTCAAGCGGGAAGAACTACATATCTTTAAGGATATTACTTCTTCTACTTCTGATCGCCGGGACTATATGGATAAATCTCTAGATTATTATCAAGATTTTTATGATAGTTTCGGAGATAAGGCGGAATTTGTCATTGCAACTCTAAACTTTAGGGAATATGATCATAACCTACAATTAAATGCAAAGAAATTGGAAGAACAGATTACAGTCCTTGATAATCGCCATCAAAATAATACAGATTCTGCCAAATACCATCGTCAACGTACTGAGCTTGTCAATCAACTAGCTAGTTTAGATAAACGTCGCAAAGAAGTCGAACCTTTTATTCAAAAATTTGGAAATCAAGATGTTGTTTTAGCTGGTAGCCTCTTTATTTATAGCCCGAAAGAAACTGTCTATCTTTTCTCTGGCTCATACACAGAATTTAATAAATTTTATGCGCCTGCAGTTCTTCAAGAATATGTTATGCAAGAGGCTTTAAAGCGTCAATCAACTTTCTATAATTTTTTAGGTATTCAAGGAAATTTTGATGGTTCAGATGGCGTACTTCGCTTTAAACAGAATTTTAATGGTTACATTGTTCGTAAAATGGGTACTTTCCGCTACTATCCAAATCCATTAAAATATAAGAGTATTCAATTACTAAAGAAAATCTTACGCCGAACATAA
diff --git a/...createschema_data/expected_results/schema_seed/short/GCA-000007265-protein625_short.fasta b/...createschema_data/expected_results/schema_seed/short/GCA-000007265-protein625_short.fasta
@@ -0,0 +1,2 @@
+>GCA-000007265-protein625_1
+ATGTCAACATTTAAACGCTATGATGAAGAATTCAAACAATCTCTTGTTAACCTTTATCAAACTGGAAAAACTCAGTCTGAACTCTGTAAAGACTATAGGGTATCCACTTCTGCGCTTGCAAAATGGATCAAACAGTACTCTCAATTCAAACTCGAAGATAATTCTGTACTTACTGCCAAGCAAATACAAGAGTTACAAAAACGTAATGCGCAGCTTGAAGAGGAGAACCTTATCCTAAAAAAAGCAAGTGCCATATTCATGCAAAACTTAAAGTAA
diff --git a/CHEWBBACA/tests/test_create_schema_sanity.py b/CHEWBBACA/tests/test_create_schema_sanity.py
@@ -47,13 +47,13 @@ def test_createschema_valid(test_args, expected):
     schema_seed = os.path.join(test_args[5], 'schema_seed')
     output_files = [os.path.join(schema_seed, file)
                     for file in os.listdir(schema_seed)
-                    if 'short' != file]
+                    if 'short' not in file]
     output_files.sort()
 
     expected_seed = os.path.join(expected, 'schema_seed')
     expected_files = [os.path.join(expected_seed, file)
                       for file in os.listdir(expected_seed)
-                      if 'short' != file]
+                      if 'short' not in file]
     expected_files.sort()
 
     # get config files