Added Dockerfile.

Dockerfile

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+FROM ubuntu:22.04
+MAINTAINER UMMI, [email protected]
+
+# Create directory to store files
+WORKDIR /WORKY/
+
+# Install wget to download files, git to clone repos and Python 3 to install and use chewBBACA
+RUN apt update && apt install -y wget git python3 python3-setuptools
+
+# Install BLAST
+WORKDIR /WORKY/BLAST
+# Download and extract
+RUN wget https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.9.0/ncbi-blast-2.9.0+-x64-linux.tar.gz && \
+	tar -xzvf ncbi-blast-2.9.0+-x64-linux.tar.gz && \
+	rm ncbi-blast-2.9.0+-x64-linux.tar.gz
+# Add BLAST executables to PATH
+ENV PATH="/WORKY/BLAST/ncbi-blast-2.9.0+/bin:${PATH}"
+
+# Install MAFFT
+WORKDIR /WORKY/MAFFT
+RUN wget https://mafft.cbrc.jp/alignment/software/mafft_7.520-1_amd64.deb
+# Install
+RUN dpkg -i mafft_7.520-1_amd64.deb
+ENV PATH="/WORKY/MAFFT:${PATH}"
+
+# Install FastTree
+WORKDIR /WORKY/FastTree
+RUN wget http://www.microbesonline.org/fasttree/FastTree
+# Change permissions for executable
+RUN chmod 755 *
+ENV PATH="/WORKY/FastTree:${PATH}"
+
+# INSTALL chewBBACA and dependencies listed in requirements.txt
+WORKDIR /WORKY/chewBBACA
+# Clone chewBBACA repo
+RUN git clone https://github.com/B-UMMI/chewBBACA.git
+WORKDIR /WORKY/chewBBACA/chewBBACA
+# Install chewBBACA and dependencies
+RUN python3 setup.py install
+ENV PATH="/WORKY/chewBBACA/chewBBACA:${PATH}"
+
+WORKDIR /WORKY/