ci: update pre-commit hooks and add workflow

.github/workflows/test-pre-commit-hooks.yml

@@ -0,0 +1,25 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Test pre-commit-hooks
+
+on:
+  pull_request:
+  merge_group:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: '3.8'
+        cache: 'pip'
+    - run: pip install pre-commit
+    - uses: actions/cache@v3
+      with:
+        path: ~/.cache/pre-commit
+        key: pre-commit-3|${{ env.pythonLocation }}|${{ runner.os }}|${{ hashFiles('.pre-commit-config.yaml') }}
+    - run: pre-commit run --all-files --show-diff-on-failure --color=always

.pre-commit-config.yaml

@@ -1,28 +1,37 @@
 repos:
   - repo: https://github.com/ambv/black
-    rev: 22.12.0
+    rev: 23.7.0
     hooks:
       - id: black
   - repo: https://github.com/pycqa/isort
     rev: 5.12.0
     hooks:
       - id: isort
         args:
-        - "--profile=black"
         - "--filter-files"
         - "--project=autora"
   - repo: https://github.com/pycqa/flake8
-    rev: 6.0.0
+    rev: 6.1.0
     hooks:
       - id: flake8
         args:
         - "--max-line-length=100"
         - "--extend-ignore=E203"
+        - "--per-file-ignores=__init__.py:F401"
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: "v0.991"
+    rev: "v1.5.1"
     hooks:
       - id: mypy
-        additional_dependencies: [types-requests]
+        additional_dependencies: [types-requests,scipy,pytest]
         language_version: python3.8
+        args:
+          - "--namespace-packages"
+          - "--explicit-package-bases"
+  - repo: https://github.com/srstevenson/nb-clean
+    rev: 2.4.0
+    hooks:
+      - id: nb-clean
+        args:
+          - --preserve-cell-outputs
 default_language_version:
   python: python3