pip install is broken #426
Description
tables just released a new version 2 hours ago that breaks pip install for allensdk. To reproduce:
conda create -n test
conda activate test
conda install pip -y
pip install allensdkerror:
...
Collecting tables (from allensdk)
Downloading https://files.pythonhosted.org/packages/f9/cb/dfca7ec0f97d34bc9acd6e1658d5c5d3642dff5c453d65ee239eda82dcdd/tables-3.5.0.tar.gz (8.3MB)
100% |████████████████████████████████| 8.3MB 7.0MB/s
Complete output from command python setup.py egg_info:
/var/folders/mc/k9f_f9bn6h11j5t97_12s2jc0000gn/T/H5close_8cjgr5d.c:1:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
main (int argc, char **argv) {
^
/var/folders/mc/k9f_f9bn6h11j5t97_12s2jc0000gn/T/H5close_8cjgr5d.c:2:5: warning: implicit declaration of function 'H5close' is invalid in C99 [-Wimplicit-function-declaration]
H5close();
^
2 warnings generated.
ld: library not found for -lhdf5
clang: error: linker command failed with exit code 1 (use -v to see invocation)
* Using Python 3.7.2 (default, Dec 29 2018, 00:00:04)
* USE_PKGCONFIG: False
* Found conda env: ``/Users/bendichter/anaconda3/envs/test``
.. ERROR:: Could not find a local HDF5 installation.
You may need to explicitly state where your local HDF5 headers and
library can be found by setting the ``HDF5_DIR`` environment
variable or by using the ``--hdf5`` command-line option.
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /private/var/folders/mc/k9f_f9bn6h11j5t97_12s2jc0000gn/T/pip-install-2ckx6lyl/tables/