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from allensdk.core.brain_observatory_cache import BrainObservatoryCache
boc = BrainObservatoryCache()
boc.get_cell_specimens(filters=[])
This should do something rational (like return all cells).
Instead I get this:
In [6]: boc.get_cell_specimens(filters=[])
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
<ipython-input-6-4646ba69734a> in <module>()
----> 1 boc.get_cell_specimens(filters=[])
/local1/git/allensdk/allensdk/core/brain_observatory_cache.pyc in get_cell_specimens(self, fi le_name, ids, experiment_container_ids, include_failed, simple, filters)
409 experiment_container_ids=expe riment_container_ids,
410 include_failed=include_failed ,
--> 411 filters=filters)
412
413 # drop the thumbnail columns
/local1/git/allensdk/allensdk/api/queries/brain_observatory_api.pyc in filter_cell_specimens( self, cell_specimens, ids, experiment_container_ids, include_failed, filters)
566 cell_specimens = self.dataframe_query(cell_specimens,
567 filters,
--> 568 'cell_specimen_id')
569
570 return cell_specimens
/local1/git/allensdk/allensdk/api/queries/brain_observatory_api.pyc in dataframe_query(self, data, filters, primary_key)
625 queries = self.dataframe_query_string(filters)
626 result_dataframe = pd.DataFrame(data)
--> 627 result_dataframe = result_dataframe.query(queries)
628
629 result_keys = set(result_dataframe[primary_key])
/local1/anaconda3/envs/py2/lib/python2.7/site-packages/pandas/core/frame.pyc in query(self, e xpr, inplace, **kwargs)
2295 kwargs['level'] = kwargs.pop('level', 0) + 1
2296 kwargs['target'] = None
-> 2297 res = self.eval(expr, **kwargs)
2298
2299 try:
/local1/anaconda3/envs/py2/lib/python2.7/site-packages/pandas/core/frame.pyc in eval(self, ex pr, inplace, **kwargs)
2364 kwargs['target'] = self
2365 kwargs['resolvers'] = kwargs.get('resolvers', ()) + tuple(resolvers)
-> 2366 return _eval(expr, inplace=inplace, **kwargs)
2367
2368 def select_dtypes(self, include=None, exclude=None):
/local1/anaconda3/envs/py2/lib/python2.7/site-packages/pandas/core/computation/eval.pyc in ev al(expr, parser, engine, truediv, local_dict, global_dict, resolvers, level, target, inplace)
261
262 if isinstance(expr, string_types):
--> 263 _check_expression(expr)
264 exprs = [e.strip() for e in expr.splitlines() if e.strip() != '']
265 else:
/local1/anaconda3/envs/py2/lib/python2.7/site-packages/pandas/core/computation/eval.pyc in _c heck_expression(expr)
99 """
100 if not expr:
--> 101 raise ValueError("expr cannot be an empty string")
102
103
ValueError: expr cannot be an empty string
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