Segmentation fault when importing amici on Mac #2486
Comments
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Hi @anamariemartinez, sorry to hear amici isn't working on your system. Could you please post the complete output of |
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Hi, thank you so much for getting back to me. Here is the output. I tried to downgrade numpy to version 1.26, but the issue was still occurring. Details
Thanks again! |
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Thanks. Unfortunately, this did not rebuild amici ( |
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Here is a file with the output of running, When I run,
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Thanks, unfortunately this still doesn't include the relevant output. When redirecting the output to file, please make sure that stderr is also included. E.g. via |
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Hi, sorry for the delayed reply. Here is that file |
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Thanks, this is what I needed. I didn't see anything suspicious in there. Could you show the output of On other Mac/ARM computers amici was working fine so far. Without any debugger output, this will be hard to pinpoint, I'm afraid. Unfortunately, I am not familiar with available debuggers on Mac. |
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While I don't really think this is the issue, you could retry it with a more recent version of swig (https://anaconda.org/conda-forge/swig instead of https://anaconda.org/anaconda/swig) and see if that changes anything. |
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Additionally, to exclude any issues related to the hdf5 dependency you can try |
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https://github.com/AMICI-dev/AMICI/releases/tag/v0.27.0 has some improvements with regards to potentially interfering systems packages. It might be worth retrying with the most recent version. Closing this for now. |
Hi,
I tried to install AMICI in a conda environment on my Mac. I followed the installation instructions, and I installed all of the dependencies. When I tried to import amici in a Jupyter notebook it instantly killed the kernel, and when I tried to import it from the terminal, it gives me a segmentation fault. My advisor tried to install and import AMICI on his Mac (same OS), and he also got the segmentation fault.
To Reproduce
pythonimport amicizsh: segmentation fault pythonpip install amici --force-reinstallAMICI version and system environment
Thanks!
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