Modify the SNPObject to store LAI data at the SNP-level + add mehod to go from window-level to SNP-level in the WindowLevelAncestryObject #15
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SNPObject
calldata_lai
andancestry_map
toSNPObject
for ancestry representation at the SNP level.n_samples
andn_snps
to retrieve information from any available attribute.n_ancestries
to obtain the number of ancestries whencalldata_lai
is present.filter_samples
andfilter_snps
to also filtercalldata_lai
if available.LocalAncestryObject
LocalAncestryObject
toWindowLevelAncestryObject
.convert_to_snp_level
method to transform aWindowLevelAncestryObject
into an SNP-levelSNPObject
. This method uniformly generates SNPs across genomic window boundaries and also supports assigning ancestry values to specified SNP coordinates.MSPReader
MSPReader
by ensuring chromosome values are converted to strings.