Add Multi-tiered Checkpointing Support to Pathways

src/dependencies/extra_deps/tpu_overrides.txt

@@ -1,3 +1,4 @@
 datasets>=4.8.5
 fsspec==2026.2.0
 gcsfs==2026.2.0
+orbax-checkpoint>=0.12.1

src/dependencies/requirements/generated_requirements/tpu-requirements.txt

@@ -4,12 +4,12 @@
 absl-py>=2.4.0
 aiofiles>=25.1.0
 aiohappyeyeballs>=2.6.2
-aiohttp>=3.13.5
+aiohttp>=3.14.1
 aiosignal>=1.4.0
 annotated-doc>=0.0.4
 annotated-types>=0.7.0
 antlr4-python3-runtime>=4.9.3
-anyio>=4.13.0
+anyio>=4.14.1
 aqtp>=0.9.0
 array-record>=0.8.3
 astroid>=4.0.4
@@ -22,29 +22,29 @@ certifi>=2026.2.25
 cffi>=2.0.0 ; platform_python_implementation != 'PyPy'
 cfgv>=3.5.0
 charset-normalizer>=3.4.7
-chex>=0.1.91
-click>=8.4.0
+chex>=0.1.92
+click>=8.4.2
 cloud-accelerator-diagnostics>=0.1.1
 cloudpickle>=3.1.2
 clu>=0.0.12
 colorama>=0.4.6
 contourpy>=1.3.3
-cryptography>=48.0.0
+cryptography>=49.0.0
 cycler>=0.12.1
-datasets>=4.8.5
+datasets>=5.0.0
 decorator>=5.3.1
 dill>=0.4.1
-distlib>=0.4.0
+distlib>=0.4.3
 distro>=1.9.0
 dm-tree>=0.1.10
 docstring-parser>=0.18.0
-drjax>=0.1.4
+drjax>=0.2.0
 editdistance>=0.8.1
 einops>=0.8.2
 einshape>=1.0
 etils>=1.14.0
 execnet>=2.1.2
-fastapi>=0.136.1
+fastapi>=0.138.0
 filelock>=3.28.0
 flatbuffers>=25.12.19
 flax>=0.12.7
@@ -53,39 +53,39 @@ frozenlist>=1.8.0
 fsspec>=2026.2.0
 gast>=0.7.0
 gcsfs>=2026.2.0
-google-api-core>=2.30.3
-google-api-python-client>=2.196.0
-google-auth>=2.53.0
+google-api-core>=2.31.0
+google-api-python-client>=2.197.0
+google-auth>=2.55.0
 google-auth-httplib2>=0.4.0
 google-auth-oauthlib>=1.4.0
-google-cloud-aiplatform>=1.153.1
-google-cloud-appengine-logging>=1.9.0
-google-cloud-audit-log>=0.5.0
-google-cloud-bigquery>=3.41.0
+google-cloud-aiplatform>=1.158.0
+google-cloud-appengine-logging>=1.10.0
+google-cloud-audit-log>=0.6.0
+google-cloud-bigquery>=3.42.1
 google-cloud-core>=2.6.0
-google-cloud-logging>=3.15.0
-google-cloud-mldiagnostics>=1.0.2
-google-cloud-monitoring>=2.30.0
-google-cloud-resource-manager>=1.17.0
-google-cloud-storage>=3.10.1
-google-cloud-storage-control>=1.11.0
+google-cloud-logging>=3.16.0
+google-cloud-mldiagnostics>=1.0.3
+google-cloud-monitoring>=2.31.0
+google-cloud-resource-manager>=1.18.0
+google-cloud-storage>=3.12.0
+google-cloud-storage-control>=1.12.0
 google-crc32c>=1.8.0
-google-genai>=2.4.0
+google-genai>=2.10.0
 google-pasta>=0.2.0
-google-resumable-media>=2.9.0
+google-resumable-media>=2.10.0
 googleapis-common-protos>=1.75.0
-grain>=0.2.16
+grain>=0.2.18
 grpc-google-iam-v1>=0.14.4
 grpcio>=1.80.0
 grpcio-status>=1.80.0
 gviz-api>=1.10.0
 h11>=0.16.0
 h5py>=3.14.0
-hf-xet>=1.5.0 ; platform_machine == 'AMD64' or platform_machine == 'aarch64' or platform_machine == 'amd64' or platform_machine == 'arm64' or platform_machine == 'x86_64'
+hf-xet>=1.5.1 ; platform_machine == 'AMD64' or platform_machine == 'aarch64' or platform_machine == 'amd64' or platform_machine == 'arm64' or platform_machine == 'x86_64'
 httpcore>=1.0.9
 httplib2>=0.31.2
 httpx>=0.28.1
-huggingface-hub>=1.15.0
+huggingface-hub>=1.20.1
 humanize>=4.15.0
 hypothesis>=6.142.1
 identify>=2.6.19
@@ -96,7 +96,7 @@ iniconfig>=2.3.0
 isort>=8.0.1
 jax>=0.10.0
 jaxlib>=0.10.0
-jaxtyping>=0.3.9
+jaxtyping>=0.3.11
 jinja2>=3.1.6
 jsonlines>=4.0.0
 keras>=3.14.0
@@ -114,9 +114,9 @@ mccabe>=0.7.0
 mdurl>=0.1.2
 ml-collections>=1.1.0
 ml-dtypes>=0.5.4
-ml-goodput-measurement>=0.0.16
+ml-goodput-measurement>=0.2.0
 mpmath>=1.3.0
-msgpack>=1.1.2
+msgpack>=1.2.1
 msgspec>=0.21.1
 multidict>=6.7.1
 multiprocess>=0.70.19
@@ -129,24 +129,26 @@ nodeenv>=1.10.0
 numpy>=2.0.2
 numpy-typing-compat>=20251206.2.0
 nvidia-cuda-cccl>=13.2.75
+nvidia-ml-py>=13.610.43
 oauthlib>=3.3.1
-omegaconf>=2.3.0
-opentelemetry-api>=1.42.0
+omegaconf>=2.3.1
+opentelemetry-api>=1.43.0
 opt-einsum>=3.4.0
 optax>=0.2.8
 optree>=0.19.0
 optype>=0.17.0
-orbax-checkpoint>=0.11.39
+orbax-checkpoint>=0.12.1
 packaging>=26.1
 pandas>=3.0.3
 parameterized>=0.9.0
 pathspec>=1.1.1
-pathwaysutils>=0.1.8
+pathwaysutils>=0.1.9
 pillow>=12.2.0
-platformdirs>=4.9.6
+platformdirs>=4.10.0
 pluggy>=1.6.0
 portpicker>=1.6.0
 pre-commit>=4.6.0
+prometheus-client>=0.20.0
 promise>=2.3
 propcache>=0.5.2
 proto-plus>=1.28.0
@@ -164,22 +166,24 @@ pyelftools>=0.32
 pyglove>=0.4.5
 pygments>=2.20.0
 pyink>=25.12.0
-pylint>=4.0.5
+pylint>=4.0.6
+pynvml>=13.0.1
+pyopenssl>=26.3.0
 pyparsing>=3.3.2
 pyproject-hooks>=1.2.0
 pytest>=8.4.2
 pytest-xdist>=3.8.0
 python-dateutil>=2.9.0.post0
-python-discovery>=1.3.1
+python-discovery>=1.4.2
 pytokens>=0.4.1
 pytype>=2024.10.11
 pyyaml>=6.0.3
-qwix>=0.1.6
+qwix>=0.1.8
 regex>=2026.5.9
 requests>=2.33.1
 requests-oauthlib>=2.0.0
 rich>=15.0.0
-safetensors>=0.7.0
+safetensors>=0.8.0
 scipy>=1.17.1
 scipy-stubs>=1.17.1.4
 sentencepiece>=0.2.1
@@ -191,7 +195,7 @@ simplejson>=4.1.1
 six>=1.17.0
 sniffio>=1.3.1
 sortedcontainers>=2.4.0
-starlette>=1.0.0
+starlette>=1.3.1
 sympy>=1.14.0
 tabulate>=0.10.0
 tenacity>=9.1.4
@@ -201,18 +205,18 @@ tensorboard-plugin-profile>=2.13.0
 tensorboardx>=2.6.5
 tensorflow>=2.20.0
 tensorflow-datasets>=4.9.10
-tensorflow-metadata>=1.17.3
+tensorflow-metadata>=1.21.0
 tensorflow-text>=2.20.1
-tensorstore>=0.1.82
+tensorstore>=0.1.84
 termcolor>=3.3.0
 tiktoken>=0.13.0
 tokamax>=0.0.12
 tokenizers>=0.22.2
 toml>=0.10.2
 tomlkit>=0.15.0
 toolz>=1.1.0
-tqdm>=4.66.3
-transformers>=5.9.0
+tqdm>=4.68.3
+transformers>=5.12.1
 treescope>=0.1.10
 typeguard>=2.13.3
 typer>=0.25.1
@@ -221,15 +225,15 @@ typing-inspection>=0.4.2
 tzdata>=2026.2 ; sys_platform == 'emscripten' or sys_platform == 'win32'
 uritemplate>=4.2.0
 urllib3>=2.6.3
-uvicorn>=0.47.0
+uvicorn>=0.49.0
 uvloop>=0.22.1
-virtualenv>=21.3.3
+virtualenv>=21.5.1
 wadler-lindig>=0.1.7
 websockets>=16.0
 werkzeug>=3.1.8
 wheel>=0.46.3
-wrapt>=2.1.2
-xxhash>=3.7.0
+wrapt>=2.2.2
+xxhash>=3.7.1
 yarl>=1.24.2
 zipp>=3.23.1
 zstandard>=0.25.0

src/maxtext/common/checkpointing.py

@@ -443,17 +443,6 @@ def create_orbax_checkpoint_manager(
       logger=orbax_logger,
   )
 
-  # Use Colocated Python checkpointing optimization (Single Controller only).
-  if enable_single_controller and colocated_python_checkpointing:
-    max_logging.log("Registering colocated python array handler")
-    checkpointing_impl = ocp.pathways.CheckpointingImpl.from_options(
-        use_colocated_python=True,
-    )
-    ocp.pathways.register_type_handlers(
-        use_single_replica_array_handler=enable_single_replica_ckpt_restoring,
-        checkpointing_impl=checkpointing_impl,
-    )
-
   max_logging.log("Checkpoint manager created!")
   return manager
 
@@ -500,6 +489,7 @@ def create_orbax_emergency_replicator_checkpoint_manager(
     local_checkpoint_dir: str,
     save_interval_steps: int,
     global_mesh: jax.sharding.Mesh,
+    colocated_python_checkpointing: bool = False,
 ):
   """Returns an emergency replicator checkpoint manager."""
   flags.FLAGS.experimental_orbax_use_distributed_process_id = True
@@ -509,6 +499,7 @@ def create_orbax_emergency_replicator_checkpoint_manager(
       epath.Path(local_checkpoint_dir),
       options=emergency_replicator_checkpoint_manager.ReplicatorCheckpointManagerOptions(
           save_interval_steps=save_interval_steps,
+          use_colocated_python=colocated_python_checkpointing,
       ),
       global_mesh=global_mesh,
   )
@@ -838,9 +829,7 @@ def map_to_pspec(data):
           (EmergencyCheckpointManager, EmergencyReplicatorCheckpointManager),
       ):
         checkpoint_path = str(checkpoint_manager.directory / str(step) / "items")
-        with handle_checkpoint_mismatch(
-            "restore NNX checkpoint", checkpoint_path
-        ):
+        with handle_checkpoint_mismatch("restore NNX checkpoint", checkpoint_path):
           restored_nnx = _load_linen_checkpoint_into_nnx(
               checkpoint_path,
               abstract_unboxed_pre_state,
@@ -876,9 +865,7 @@ def map_to_pspec(data):
                   EmergencyReplicatorCheckpointManager,
               ),
           ):
-            restored = checkpoint_manager.restore(
-                step, args=Composite(state=checkpoint_args)
-            ).state
+            restored = checkpoint_manager.restore(step, args=Composite(state=checkpoint_args)).state
             _assert_no_shaped_dtype_struct(restored)
             return (
                 restored,
@@ -906,9 +893,7 @@ def map_to_pspec(data):
           # Case 3: Default/Fallback case.
           # This case acts as a wildcard ('_') and matches if none of the preceding cases were met.
           case _:
-            restored = checkpoint_manager.restore(
-                step, args=Composite(items=checkpoint_args)
-            )
+            restored = checkpoint_manager.restore(step, args=Composite(items=checkpoint_args))
             _assert_no_shaped_dtype_struct(restored)
             return (restored, None)
 
@@ -918,9 +903,7 @@ def map_to_pspec(data):
     else:
       params = abstract_unboxed_pre_state.params
 
-    with handle_checkpoint_mismatch(
-        "load parameters", load_parameters_from_path
-    ):
+    with handle_checkpoint_mismatch("load parameters", load_parameters_from_path):
       restored_params = load_params_from_path(
           load_parameters_from_path,
           params,
@@ -932,9 +915,7 @@ def map_to_pspec(data):
     return None, restored_params
   elif load_full_state_from_path != "":
     max_logging.log(f"Loading full state from path: {load_full_state_from_path}")
-    with handle_checkpoint_mismatch(
-        "load full state", load_full_state_from_path
-    ):
+    with handle_checkpoint_mismatch("load full state", load_full_state_from_path):
       restored_state = _load_full_state_from_path(
           path=load_full_state_from_path,
           abstract_unboxed_pre_state=abstract_unboxed_pre_state,

src/maxtext/utils/max_utils.py

@@ -246,6 +246,17 @@ def maybe_initialize_jax_distributed_system(raw_keys):
     return
   if raw_keys["enable_single_controller"]:
     max_logging.log("Skipping jax distributed system since its not needed for single controller.")
+    if raw_keys["enable_multi_tier_checkpointing"]:
+      max_logging.log("Initializing multi-tier checkpointing for single controller...")
+      initialize_multi_tier_checkpointing(
+          local_checkpoint_directory=raw_keys["local_checkpoint_directory"],
+          backup_interval_minutes=raw_keys["multi_tier_checkpointing_backup_interval_minutes"],
+          run_name=raw_keys["run_name"],
+          jax_initialization_timeout_seconds=raw_keys["jax_distributed_initialization_timeout"],
+          data_parallelism=raw_keys["mtc_data_parallelism"],
+          num_slices=raw_keys["num_slices"],
+          use_colocated_python=True,
+      )
     return
   if jax.distributed.is_initialized():
     max_logging.log("Jax distributed system is already initialized.")
@@ -290,6 +301,7 @@ def maybe_initialize_jax_distributed_system(raw_keys):
         run_name=raw_keys["run_name"],
         jax_initialization_timeout_seconds=raw_keys["jax_distributed_initialization_timeout"],
         data_parallelism=raw_keys["mtc_data_parallelism"],
+        num_slices=raw_keys["num_slices"],
     )
     max_logging.log("Jax distributed system initialized on TPUs for multi-tier checkpointing!")
   elif raw_keys["enable_checkpointing"] and raw_keys["compile_topology_num_slices"] == -1:

src/maxtext/utils/train_utils.py

@@ -18,6 +18,7 @@
 import subprocess
 import jax
 import functools
+import orbax.checkpoint.pathways as ocp_pathways
 from functools import partial
 
 from flax import nnx
@@ -55,6 +56,7 @@ def create_checkpoint_manager(config, mesh, init_state_fn):
         config.local_checkpoint_directory,
         config.local_checkpoint_period,
         mesh,
+        config.colocated_python_checkpointing,
     )
   elif config.enable_emergency_checkpoint:
     abstract_state, _, _ = maxtext_utils.get_abstract_state(config, mesh, init_state_fn, is_training=True)
@@ -97,6 +99,17 @@ def create_checkpoint_manager(config, mesh, init_state_fn):
         config.checkpoint_todelete_full_path,
     )
 
+  # Use Colocated Python checkpointing dispatchers optimization (Single Controller only).
+  if checkpoint_manager is not None and config.enable_single_controller and config.colocated_python_checkpointing:
+    max_logging.log("Registering colocated python array handler")
+    checkpointing_impl = ocp_pathways.CheckpointingImpl.from_options(
+        use_colocated_python=True,
+    )
+    ocp_pathways.register_type_handlers(
+        use_single_replica_array_handler=config.enable_single_replica_ckpt_restoring,
+        checkpointing_impl=checkpointing_impl,
+    )
+
   return checkpoint_manager