From f56cd0787e5dba74beff3ea4f699f892c7500e09 Mon Sep 17 00:00:00 2001 From: Michael Macias Date: Thu, 26 Sep 2024 11:19:36 -0500 Subject: [PATCH] Bump versions for noodles 0.83.0 --- noodles-bam/CHANGELOG.md | 2 +- noodles-bam/Cargo.toml | 8 ++++---- noodles-bcf/CHANGELOG.md | 6 ++++++ noodles-bcf/Cargo.toml | 6 +++--- noodles-bed/CHANGELOG.md | 2 +- noodles-bed/Cargo.toml | 2 +- noodles-cram/CHANGELOG.md | 2 +- noodles-cram/Cargo.toml | 10 +++++----- noodles-csi/CHANGELOG.md | 2 +- noodles-csi/Cargo.toml | 2 +- noodles-fasta/CHANGELOG.md | 2 +- noodles-fasta/Cargo.toml | 2 +- noodles-fastq/CHANGELOG.md | 2 +- noodles-fastq/Cargo.toml | 2 +- noodles-gff/CHANGELOG.md | 6 ++++++ noodles-gff/Cargo.toml | 4 ++-- noodles-gtf/CHANGELOG.md | 6 ++++++ noodles-gtf/Cargo.toml | 4 ++-- noodles-sam/CHANGELOG.md | 2 +- noodles-sam/Cargo.toml | 4 ++-- noodles-tabix/CHANGELOG.md | 2 +- noodles-tabix/Cargo.toml | 4 ++-- noodles-util/CHANGELOG.md | 6 +++++- noodles-util/Cargo.toml | 16 ++++++++-------- noodles-vcf/CHANGELOG.md | 2 +- noodles-vcf/Cargo.toml | 6 +++--- noodles/CHANGELOG.md | 16 ++++++++++++++++ noodles/Cargo.toml | 26 +++++++++++++------------- 28 files changed, 96 insertions(+), 58 deletions(-) diff --git a/noodles-bam/CHANGELOG.md b/noodles-bam/CHANGELOG.md index 6fda2c424..b453d183b 100644 --- a/noodles-bam/CHANGELOG.md +++ b/noodles-bam/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.68.0 - 2024-09-26 ### Added diff --git a/noodles-bam/Cargo.toml b/noodles-bam/Cargo.toml index 5f12c1141..93e280663 100644 --- a/noodles-bam/Cargo.toml +++ b/noodles-bam/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-bam" -version = "0.67.0" +version = "0.68.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -23,12 +23,12 @@ tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.38.0" } -noodles-sam = { path = "../noodles-sam", version = "0.64.0" } +noodles-csi = { path = "../noodles-csi", version = "0.39.0" } +noodles-sam = { path = "../noodles-sam", version = "0.65.0" } [dev-dependencies] flate2.workspace = true -noodles-sam = { path = "../noodles-sam", version = "0.64.0", features = ["async"] } +noodles-sam = { path = "../noodles-sam", version = "0.65.0", features = ["async"] } tokio = { workspace = true, features = ["io-std", "macros", "rt-multi-thread"] } [package.metadata.docs.rs] diff --git a/noodles-bcf/CHANGELOG.md b/noodles-bcf/CHANGELOG.md index 4d77cd029..e79609866 100644 --- a/noodles-bcf/CHANGELOG.md +++ b/noodles-bcf/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.62.0 - 2024-09-26 + +### Changed + + * bcf: Sync dependencies. + ## 0.61.0 - 2024-09-12 ### Changed diff --git a/noodles-bcf/Cargo.toml b/noodles-bcf/Cargo.toml index 88bafd980..7a51738f6 100644 --- a/noodles-bcf/Cargo.toml +++ b/noodles-bcf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-bcf" -version = "0.61.0" +version = "0.62.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -18,8 +18,8 @@ byteorder.workspace = true indexmap.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.38.0" } -noodles-vcf = { path = "../noodles-vcf", version = "0.65.0" } +noodles-csi = { path = "../noodles-csi", version = "0.39.0" } +noodles-vcf = { path = "../noodles-vcf", version = "0.66.0" } futures = { workspace = true, optional = true, features = ["std"] } tokio = { workspace = true, optional = true, features = ["io-util"] } diff --git a/noodles-bed/CHANGELOG.md b/noodles-bed/CHANGELOG.md index ffc8a51da..c5587db75 100644 --- a/noodles-bed/CHANGELOG.md +++ b/noodles-bed/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.17.0 - 2024-09-26 ### Changed diff --git a/noodles-bed/Cargo.toml b/noodles-bed/Cargo.toml index ed6a1cbc6..f47506c2a 100644 --- a/noodles-bed/Cargo.toml +++ b/noodles-bed/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-bed" -version = "0.16.0" +version = "0.17.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true diff --git a/noodles-cram/CHANGELOG.md b/noodles-cram/CHANGELOG.md index df3c5e236..259dd9e29 100644 --- a/noodles-cram/CHANGELOG.md +++ b/noodles-cram/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.69.0 - 2024-09-26 ### Deprecated diff --git a/noodles-cram/Cargo.toml b/noodles-cram/Cargo.toml index ed66e7a48..f46ef57ee 100644 --- a/noodles-cram/Cargo.toml +++ b/noodles-cram/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-cram" -version = "0.68.0" +version = "0.69.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -23,10 +23,10 @@ bzip2 = "0.4.4" flate2.workspace = true indexmap.workspace = true md-5 = "0.10.0" -noodles-bam = { path = "../noodles-bam", version = "0.67.0" } +noodles-bam = { path = "../noodles-bam", version = "0.68.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-fasta = { path = "../noodles-fasta", version = "0.43.0" } -noodles-sam = { path = "../noodles-sam", version = "0.64.0" } +noodles-fasta = { path = "../noodles-fasta", version = "0.44.0" } +noodles-sam = { path = "../noodles-sam", version = "0.65.0" } xz2 = "0.1.6" async-compression = { version = "0.4.0", optional = true, features = ["gzip", "tokio"] } @@ -37,7 +37,7 @@ tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } libdeflater = { workspace = true, optional = true } [dev-dependencies] -noodles-sam = { path = "../noodles-sam", version = "0.64.0", features = ["async"] } +noodles-sam = { path = "../noodles-sam", version = "0.65.0", features = ["async"] } tokio = { workspace = true, features = ["io-std", "macros", "rt-multi-thread"] } [package.metadata.docs.rs] diff --git a/noodles-csi/CHANGELOG.md b/noodles-csi/CHANGELOG.md index a243bb197..61fc6bda0 100644 --- a/noodles-csi/CHANGELOG.md +++ b/noodles-csi/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.39.0 - 2024-09-26 ### Changed diff --git a/noodles-csi/Cargo.toml b/noodles-csi/Cargo.toml index 7b2268249..918a4d918 100644 --- a/noodles-csi/Cargo.toml +++ b/noodles-csi/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-csi" -version = "0.38.0" +version = "0.39.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true diff --git a/noodles-fasta/CHANGELOG.md b/noodles-fasta/CHANGELOG.md index e76f2ee6b..11369b610 100644 --- a/noodles-fasta/CHANGELOG.md +++ b/noodles-fasta/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.44.0 - 2024-09-26 ### Changed diff --git a/noodles-fasta/Cargo.toml b/noodles-fasta/Cargo.toml index 2167f501c..bed4235d1 100644 --- a/noodles-fasta/Cargo.toml +++ b/noodles-fasta/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-fasta" -version = "0.43.0" +version = "0.44.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true diff --git a/noodles-fastq/CHANGELOG.md b/noodles-fastq/CHANGELOG.md index 2007066e3..e10ae97c1 100644 --- a/noodles-fastq/CHANGELOG.md +++ b/noodles-fastq/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.15.0 - 2024-09-26 ### Changed diff --git a/noodles-fastq/Cargo.toml b/noodles-fastq/Cargo.toml index 9aa9e4ef9..da2e5d023 100644 --- a/noodles-fastq/Cargo.toml +++ b/noodles-fastq/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-fastq" -version = "0.14.0" +version = "0.15.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true diff --git a/noodles-gff/CHANGELOG.md b/noodles-gff/CHANGELOG.md index 704ccf62d..f71287bcc 100644 --- a/noodles-gff/CHANGELOG.md +++ b/noodles-gff/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.38.0 - 2024-09-26 + +### Changed + + * gff: Sync dependencies. + ## 0.37.0 - 2024-09-09 ### Added diff --git a/noodles-gff/Cargo.toml b/noodles-gff/Cargo.toml index 34d3d5d9b..84784d01a 100644 --- a/noodles-gff/Cargo.toml +++ b/noodles-gff/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-gff" -version = "0.37.0" +version = "0.38.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -17,7 +17,7 @@ async = ["dep:futures", "dep:tokio"] indexmap.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.38.0" } +noodles-csi = { path = "../noodles-csi", version = "0.39.0" } percent-encoding.workspace = true futures = { workspace = true, optional = true, features = ["std"] } diff --git a/noodles-gtf/CHANGELOG.md b/noodles-gtf/CHANGELOG.md index cbe6fe94d..c835c1bb8 100644 --- a/noodles-gtf/CHANGELOG.md +++ b/noodles-gtf/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.33.0 - 2024-09-26 + +### Changed + + * gtf: Sync dependencies. + ## 0.32.0 - 2024-09-09 ### Added diff --git a/noodles-gtf/Cargo.toml b/noodles-gtf/Cargo.toml index 7942a5ae7..50ec2ff12 100644 --- a/noodles-gtf/Cargo.toml +++ b/noodles-gtf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-gtf" -version = "0.32.0" +version = "0.33.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -13,4 +13,4 @@ documentation = "https://docs.rs/noodles-gtf" [dependencies] noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.38.0" } +noodles-csi = { path = "../noodles-csi", version = "0.39.0" } diff --git a/noodles-sam/CHANGELOG.md b/noodles-sam/CHANGELOG.md index 31bee7c00..dc1dec243 100644 --- a/noodles-sam/CHANGELOG.md +++ b/noodles-sam/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.65.0 - 2024-09-26 ### Added diff --git a/noodles-sam/Cargo.toml b/noodles-sam/Cargo.toml index af4fd2a82..8abd3cd32 100644 --- a/noodles-sam/Cargo.toml +++ b/noodles-sam/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-sam" -version = "0.64.0" +version = "0.65.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -21,7 +21,7 @@ lexical-core.workspace = true memchr.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.38.0" } +noodles-csi = { path = "../noodles-csi", version = "0.39.0" } futures = { workspace = true, optional = true, features = ["std"] } tokio = { workspace = true, optional = true, features = ["io-util"] } diff --git a/noodles-tabix/CHANGELOG.md b/noodles-tabix/CHANGELOG.md index b97e703e4..7895a9c9c 100644 --- a/noodles-tabix/CHANGELOG.md +++ b/noodles-tabix/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.45.0 - 2024-09-26 ### Changed diff --git a/noodles-tabix/Cargo.toml b/noodles-tabix/Cargo.toml index 909cdb5aa..4b6e653c3 100644 --- a/noodles-tabix/Cargo.toml +++ b/noodles-tabix/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-tabix" -version = "0.44.0" +version = "0.45.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -18,7 +18,7 @@ byteorder.workspace = true indexmap.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.38.0" } +noodles-csi = { path = "../noodles-csi", version = "0.39.0" } tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } diff --git a/noodles-util/CHANGELOG.md b/noodles-util/CHANGELOG.md index e0a791abe..6cbb17137 100644 --- a/noodles-util/CHANGELOG.md +++ b/noodles-util/CHANGELOG.md @@ -1,6 +1,10 @@ # Changelog -## Unreleased +## 0.53.1 - 2024-09-26 + +### Changed + + * util: Sync dependencies. ### Fixed diff --git a/noodles-util/Cargo.toml b/noodles-util/Cargo.toml index 967a44919..bb7ec6c8c 100644 --- a/noodles-util/Cargo.toml +++ b/noodles-util/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-util" -version = "0.53.0" +version = "0.53.1" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -40,15 +40,15 @@ variant = [ [dependencies] flate2 = { workspace = true } -noodles-bam = { path = "../noodles-bam", version = "0.67.0", optional = true } -noodles-bcf = { path = "../noodles-bcf", version = "0.61.0", optional = true } +noodles-bam = { path = "../noodles-bam", version = "0.68.0", optional = true } +noodles-bcf = { path = "../noodles-bcf", version = "0.62.0", optional = true } noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0", optional = true } noodles-core = { path = "../noodles-core", version = "0.15.0", optional = true } -noodles-cram = { path = "../noodles-cram", version = "0.68.0", optional = true } -noodles-csi = { path = "../noodles-csi", version = "0.38.0", optional = true } -noodles-fasta = { path = "../noodles-fasta", version = "0.43.0", optional = true } -noodles-sam = { path = "../noodles-sam", version = "0.64.0", optional = true } -noodles-vcf = { path = "../noodles-vcf", version = "0.65.0", optional = true } +noodles-cram = { path = "../noodles-cram", version = "0.69.0", optional = true } +noodles-csi = { path = "../noodles-csi", version = "0.39.0", optional = true } +noodles-fasta = { path = "../noodles-fasta", version = "0.44.0", optional = true } +noodles-sam = { path = "../noodles-sam", version = "0.65.0", optional = true } +noodles-vcf = { path = "../noodles-vcf", version = "0.66.0", optional = true } futures = { workspace = true, optional = true, features = ["std"] } tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } diff --git a/noodles-vcf/CHANGELOG.md b/noodles-vcf/CHANGELOG.md index 2dd2fa63d..2993564dc 100644 --- a/noodles-vcf/CHANGELOG.md +++ b/noodles-vcf/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.66.0 - 2024-09-26 ### Changed diff --git a/noodles-vcf/Cargo.toml b/noodles-vcf/Cargo.toml index 1da4dd985..33ac0e5d7 100644 --- a/noodles-vcf/Cargo.toml +++ b/noodles-vcf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-vcf" -version = "0.65.0" +version = "0.66.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -18,8 +18,8 @@ indexmap.workspace = true memchr.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.38.0" } -noodles-tabix = { path = "../noodles-tabix", version = "0.44.0" } +noodles-csi = { path = "../noodles-csi", version = "0.39.0" } +noodles-tabix = { path = "../noodles-tabix", version = "0.45.0" } percent-encoding.workspace = true futures = { workspace = true, optional = true, features = ["std"] } diff --git a/noodles/CHANGELOG.md b/noodles/CHANGELOG.md index a38f5786f..f597cb949 100644 --- a/noodles/CHANGELOG.md +++ b/noodles/CHANGELOG.md @@ -1,5 +1,21 @@ # Changelog +## 0.83.0 - 2024-09-26 + + * [noodles-bam 0.68.0](https://github.com/zaeleus/noodles/blob/noodles-bam-0.68.0/noodles-bam/CHANGELOG.md) + * [noodles-bcf 0.62.0](https://github.com/zaeleus/noodles/blob/noodles-bcf-0.62.0/noodles-bcf/CHANGELOG.md) + * [noodles-bed 0.17.0](https://github.com/zaeleus/noodles/blob/noodles-bed-0.17.0/noodles-bed/CHANGELOG.md) + * [noodles-cram 0.69.0](https://github.com/zaeleus/noodles/blob/noodles-cram-0.69.0/noodles-cram/CHANGELOG.md) + * [noodles-csi 0.39.0](https://github.com/zaeleus/noodles/blob/noodles-csi-0.39.0/noodles-csi/CHANGELOG.md) + * [noodles-fasta 0.44.0](https://github.com/zaeleus/noodles/blob/noodles-fasta-0.44.0/noodles-fasta/CHANGELOG.md) + * [noodles-fastq 0.15.0](https://github.com/zaeleus/noodles/blob/noodles-fastq-0.15.0/noodles-fastq/CHANGELOG.md) + * [noodles-gff 0.38.0](https://github.com/zaeleus/noodles/blob/noodles-gff-0.38.0/noodles-gff/CHANGELOG.md) + * [noodles-gtf 0.33.0](https://github.com/zaeleus/noodles/blob/noodles-gtf-0.33.0/noodles-gtf/CHANGELOG.md) + * [noodles-sam 0.65.0](https://github.com/zaeleus/noodles/blob/noodles-sam-0.65.0/noodles-sam/CHANGELOG.md) + * [noodles-tabix 0.45.0](https://github.com/zaeleus/noodles/blob/noodles-tabix-0.45.0/noodles-tabix/CHANGELOG.md) + * [noodles-util 0.53.1](https://github.com/zaeleus/noodles/blob/noodles-util-0.53.1/noodles-util/CHANGELOG.md) + * [noodles-vcf 0.66.0](https://github.com/zaeleus/noodles/blob/noodles-vcf-0.66.0/noodles-vcf/CHANGELOG.md) + ## 0.82.0 - 2024-09-12 * [noodles-bcf 0.61.0](https://github.com/zaeleus/noodles/blob/noodles-bcf-0.61.0/noodles-bcf/CHANGELOG.md) diff --git a/noodles/Cargo.toml b/noodles/Cargo.toml index 3abe99ac5..4f20aa3fd 100644 --- a/noodles/Cargo.toml +++ b/noodles/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles" -version = "0.82.0" +version = "0.83.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -12,22 +12,22 @@ documentation = "https://docs.rs/noodles" readme = "../README.md" [dependencies] -noodles-bam = { path = "../noodles-bam", version = "0.67.0", optional = true } -noodles-bcf = { path = "../noodles-bcf", version = "0.61.0", optional = true } -noodles-bed = { path = "../noodles-bed", version = "0.16.0", optional = true } +noodles-bam = { path = "../noodles-bam", version = "0.68.0", optional = true } +noodles-bcf = { path = "../noodles-bcf", version = "0.62.0", optional = true } +noodles-bed = { path = "../noodles-bed", version = "0.17.0", optional = true } noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0", optional = true } noodles-core = { path = "../noodles-core", version = "0.15.0", optional = true } -noodles-cram = { path = "../noodles-cram", version = "0.68.0", optional = true } -noodles-csi = { path = "../noodles-csi", version = "0.38.0", optional = true } -noodles-fasta = { path = "../noodles-fasta", version = "0.43.0", optional = true } -noodles-fastq = { path = "../noodles-fastq", version = "0.14.0", optional = true } -noodles-gff = { path = "../noodles-gff", version = "0.37.0", optional = true } -noodles-gtf = { path = "../noodles-gtf", version = "0.32.0", optional = true } +noodles-cram = { path = "../noodles-cram", version = "0.69.0", optional = true } +noodles-csi = { path = "../noodles-csi", version = "0.39.0", optional = true } +noodles-fasta = { path = "../noodles-fasta", version = "0.44.0", optional = true } +noodles-fastq = { path = "../noodles-fastq", version = "0.15.0", optional = true } +noodles-gff = { path = "../noodles-gff", version = "0.38.0", optional = true } +noodles-gtf = { path = "../noodles-gtf", version = "0.33.0", optional = true } noodles-htsget = { path = "../noodles-htsget", version = "0.6.0", optional = true } noodles-refget = { path = "../noodles-refget", version = "0.5.0", optional = true } -noodles-sam = { path = "../noodles-sam", version = "0.64.0", optional = true } -noodles-tabix = { path = "../noodles-tabix", version = "0.44.0", optional = true } -noodles-vcf = { path = "../noodles-vcf", version = "0.65.0", optional = true } +noodles-sam = { path = "../noodles-sam", version = "0.65.0", optional = true } +noodles-tabix = { path = "../noodles-tabix", version = "0.45.0", optional = true } +noodles-vcf = { path = "../noodles-vcf", version = "0.66.0", optional = true } [features] default = []