From b9edf2755aa3ac518aefd82e6425f37f9b23dd3c Mon Sep 17 00:00:00 2001 From: Michael Macias Date: Thu, 6 Jul 2023 14:31:08 -0500 Subject: [PATCH] Bump versions for noodles 0.44.0 --- README.md | 2 +- noodles-bam/CHANGELOG.md | 6 ++++++ noodles-bam/Cargo.toml | 8 ++++---- noodles-bcf/CHANGELOG.md | 2 +- noodles-bcf/Cargo.toml | 6 +++--- noodles-cram/CHANGELOG.md | 2 +- noodles-cram/Cargo.toml | 8 ++++---- noodles-csi/CHANGELOG.md | 2 +- noodles-csi/Cargo.toml | 2 +- noodles-gff/CHANGELOG.md | 6 ++++++ noodles-gff/Cargo.toml | 4 ++-- noodles-gtf/CHANGELOG.md | 6 ++++++ noodles-gtf/Cargo.toml | 4 ++-- noodles-sam/CHANGELOG.md | 2 +- noodles-sam/Cargo.toml | 4 ++-- noodles-tabix/CHANGELOG.md | 6 ++++++ noodles-tabix/Cargo.toml | 4 ++-- noodles-util/CHANGELOG.md | 6 +++++- noodles-util/Cargo.toml | 12 ++++++------ noodles-vcf/CHANGELOG.md | 2 +- noodles-vcf/Cargo.toml | 6 +++--- noodles/CHANGELOG.md | 13 +++++++++++++ noodles/Cargo.toml | 20 ++++++++++---------- 23 files changed, 87 insertions(+), 46 deletions(-) diff --git a/README.md b/README.md index 2c15c869c..6f92d15e4 100644 --- a/README.md +++ b/README.md @@ -20,7 +20,7 @@ list; and formats, listed as [features]. For example, to work with the BAM format, enable the `bam` feature. ```toml -noodles = { version = "0.43.0", features = ["bam"] } +noodles = { version = "0.44.0", features = ["bam"] } ``` Each enabled feature can then be imported by its re-exported name, e.g., diff --git a/noodles-bam/CHANGELOG.md b/noodles-bam/CHANGELOG.md index a843a3ca5..7f4e593ee 100644 --- a/noodles-bam/CHANGELOG.md +++ b/noodles-bam/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.38.0 - 2023-07-06 + +### Changed + + * bam: Sync dependencies. + ## 0.37.0 - 2023-06-29 ### Changed diff --git a/noodles-bam/Cargo.toml b/noodles-bam/Cargo.toml index ad4d878db..41eb3df80 100644 --- a/noodles-bam/Cargo.toml +++ b/noodles-bam/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-bam" -version = "0.37.0" +version = "0.38.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -22,11 +22,11 @@ tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } noodles-bgzf = { path = "../noodles-bgzf", version = "0.22.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.21.0" } -noodles-sam = { path = "../noodles-sam", version = "0.34.0" } +noodles-csi = { path = "../noodles-csi", version = "0.22.0" } +noodles-sam = { path = "../noodles-sam", version = "0.35.0" } [dev-dependencies] -noodles-sam = { path = "../noodles-sam", version = "0.34.0", features = ["async"] } +noodles-sam = { path = "../noodles-sam", version = "0.35.0", features = ["async"] } tokio = { workspace = true, features = ["io-std", "macros", "rt-multi-thread"] } [package.metadata.docs.rs] diff --git a/noodles-bcf/CHANGELOG.md b/noodles-bcf/CHANGELOG.md index 3542047d0..489018bb8 100644 --- a/noodles-bcf/CHANGELOG.md +++ b/noodles-bcf/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.31.0 - 2023-07-06 ### Changed diff --git a/noodles-bcf/Cargo.toml b/noodles-bcf/Cargo.toml index ce1703f35..a1c3d7e02 100644 --- a/noodles-bcf/Cargo.toml +++ b/noodles-bcf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-bcf" -version = "0.30.0" +version = "0.31.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -18,8 +18,8 @@ byteorder.workspace = true indexmap.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.22.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.21.0" } -noodles-vcf = { path = "../noodles-vcf", version = "0.33.0" } +noodles-csi = { path = "../noodles-csi", version = "0.22.0" } +noodles-vcf = { path = "../noodles-vcf", version = "0.34.0" } futures = { workspace = true, optional = true, features = ["std"] } tokio = { workspace = true, optional = true, features = ["io-util"] } diff --git a/noodles-cram/CHANGELOG.md b/noodles-cram/CHANGELOG.md index bf53cbda7..84e31e856 100644 --- a/noodles-cram/CHANGELOG.md +++ b/noodles-cram/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.35.0 - 2023-07-06 ### Changed diff --git a/noodles-cram/Cargo.toml b/noodles-cram/Cargo.toml index f96c92dd6..95d965cad 100644 --- a/noodles-cram/Cargo.toml +++ b/noodles-cram/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-cram" -version = "0.34.0" +version = "0.35.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -21,10 +21,10 @@ bytes.workspace = true bzip2 = "0.4.4" flate2.workspace = true md-5 = "0.10.0" -noodles-bam = { path = "../noodles-bam", version = "0.37.0" } +noodles-bam = { path = "../noodles-bam", version = "0.38.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } noodles-fasta = { path = "../noodles-fasta", version = "0.25.0" } -noodles-sam = { path = "../noodles-sam", version = "0.34.0" } +noodles-sam = { path = "../noodles-sam", version = "0.35.0" } xz2 = "0.1.6" async-compression = { version = "0.4.0", optional = true, features = ["gzip", "tokio"] } @@ -35,7 +35,7 @@ tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } libdeflater = { workspace = true, optional = true } [dev-dependencies] -noodles-sam = { path = "../noodles-sam", version = "0.34.0", features = ["async"] } +noodles-sam = { path = "../noodles-sam", version = "0.35.0", features = ["async"] } tokio = { workspace = true, features = ["io-std", "macros", "rt-multi-thread"] } [package.metadata.docs.rs] diff --git a/noodles-csi/CHANGELOG.md b/noodles-csi/CHANGELOG.md index ce497f39e..3de6b0a82 100644 --- a/noodles-csi/CHANGELOG.md +++ b/noodles-csi/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.22.0 - 2023-07-06 ### Changed diff --git a/noodles-csi/Cargo.toml b/noodles-csi/Cargo.toml index 156b565b5..ed9d1ecc1 100644 --- a/noodles-csi/Cargo.toml +++ b/noodles-csi/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-csi" -version = "0.21.0" +version = "0.22.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true diff --git a/noodles-gff/CHANGELOG.md b/noodles-gff/CHANGELOG.md index 5677200b1..0069b0a6b 100644 --- a/noodles-gff/CHANGELOG.md +++ b/noodles-gff/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.16.0 - 2023-07-06 + +### Changed + + * gff: Sync dependencies. + ## 0.15.0 - 2023-06-29 ### Changed diff --git a/noodles-gff/Cargo.toml b/noodles-gff/Cargo.toml index f965e2a55..82c1f8669 100644 --- a/noodles-gff/Cargo.toml +++ b/noodles-gff/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-gff" -version = "0.15.0" +version = "0.16.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -13,5 +13,5 @@ documentation = "https://docs.rs/noodles-gff" [dependencies] noodles-bgzf = { path = "../noodles-bgzf", version = "0.22.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.21.0" } +noodles-csi = { path = "../noodles-csi", version = "0.22.0" } percent-encoding.workspace = true diff --git a/noodles-gtf/CHANGELOG.md b/noodles-gtf/CHANGELOG.md index 87b06eea4..aa456417e 100644 --- a/noodles-gtf/CHANGELOG.md +++ b/noodles-gtf/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.14.0 - 2023-07-06 + +### Changed + + * gtf: Sync dependencies. + ## 0.13.0 - 2023-06-29 ### Changed diff --git a/noodles-gtf/Cargo.toml b/noodles-gtf/Cargo.toml index fe00c0878..cc1b1cfee 100644 --- a/noodles-gtf/Cargo.toml +++ b/noodles-gtf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-gtf" -version = "0.13.0" +version = "0.14.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -13,4 +13,4 @@ documentation = "https://docs.rs/noodles-gtf" [dependencies] noodles-bgzf = { path = "../noodles-bgzf", version = "0.22.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.21.0" } +noodles-csi = { path = "../noodles-csi", version = "0.22.0" } diff --git a/noodles-sam/CHANGELOG.md b/noodles-sam/CHANGELOG.md index dd340d722..7f9a8ed74 100644 --- a/noodles-sam/CHANGELOG.md +++ b/noodles-sam/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.35.0 - 2023-07-06 ### Changed diff --git a/noodles-sam/Cargo.toml b/noodles-sam/Cargo.toml index ed2e29ed4..88b4c407e 100644 --- a/noodles-sam/Cargo.toml +++ b/noodles-sam/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-sam" -version = "0.34.0" +version = "0.35.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -20,7 +20,7 @@ lexical-core = "0.8.5" memchr.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.22.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.21.0" } +noodles-csi = { path = "../noodles-csi", version = "0.22.0" } futures = { workspace = true, optional = true, features = ["std"] } tokio = { workspace = true, optional = true, features = ["io-util"] } diff --git a/noodles-tabix/CHANGELOG.md b/noodles-tabix/CHANGELOG.md index 3fb7259f2..3c6d85f0b 100644 --- a/noodles-tabix/CHANGELOG.md +++ b/noodles-tabix/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.25.0 - 2023-07-06 + +### Changed + + * tabix: Sync dependencies. + ## 0.24.0 - 2023-06-29 ### Changed diff --git a/noodles-tabix/Cargo.toml b/noodles-tabix/Cargo.toml index 0b05b09dc..a9b93a9bc 100644 --- a/noodles-tabix/Cargo.toml +++ b/noodles-tabix/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-tabix" -version = "0.24.0" +version = "0.25.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -18,7 +18,7 @@ bit-vec.workspace = true byteorder.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.22.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.21.0" } +noodles-csi = { path = "../noodles-csi", version = "0.22.0" } tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } diff --git a/noodles-util/CHANGELOG.md b/noodles-util/CHANGELOG.md index e45e20d1d..bed4d21ee 100644 --- a/noodles-util/CHANGELOG.md +++ b/noodles-util/CHANGELOG.md @@ -1,6 +1,10 @@ # Changelog -## Unreleased +## 0.16.0 - 2023-07-06 + +### Changed + + * util: Sync dependencies. ### Fixed diff --git a/noodles-util/Cargo.toml b/noodles-util/Cargo.toml index 914ef9b27..11cdfbab1 100644 --- a/noodles-util/Cargo.toml +++ b/noodles-util/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-util" -version = "0.15.0" +version = "0.16.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -26,13 +26,13 @@ variant = [ [dependencies] flate2 = { workspace = true } -noodles-bam = { path = "../noodles-bam", version = "0.37.0", optional = true } -noodles-bcf = { path = "../noodles-bcf", version = "0.30.0", optional = true } +noodles-bam = { path = "../noodles-bam", version = "0.38.0", optional = true } +noodles-bcf = { path = "../noodles-bcf", version = "0.31.0", optional = true } noodles-bgzf = { path = "../noodles-bgzf", version = "0.22.0", optional = true } -noodles-cram = { path = "../noodles-cram", version = "0.34.0", optional = true } +noodles-cram = { path = "../noodles-cram", version = "0.35.0", optional = true } noodles-fasta = { path = "../noodles-fasta", version = "0.25.0", optional = true } -noodles-sam = { path = "../noodles-sam", version = "0.34.0", optional = true } -noodles-vcf = { path = "../noodles-vcf", version = "0.33.0", optional = true } +noodles-sam = { path = "../noodles-sam", version = "0.35.0", optional = true } +noodles-vcf = { path = "../noodles-vcf", version = "0.34.0", optional = true } [package.metadata.docs.rs] all-features = true diff --git a/noodles-vcf/CHANGELOG.md b/noodles-vcf/CHANGELOG.md index c3548701a..bcb40efd1 100644 --- a/noodles-vcf/CHANGELOG.md +++ b/noodles-vcf/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.34.0 - 2023-07-06 ### Changed diff --git a/noodles-vcf/Cargo.toml b/noodles-vcf/Cargo.toml index 061709c40..a7d1878bf 100644 --- a/noodles-vcf/Cargo.toml +++ b/noodles-vcf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-vcf" -version = "0.33.0" +version = "0.34.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -19,8 +19,8 @@ memchr.workspace = true nom = "7.0.0" noodles-bgzf = { path = "../noodles-bgzf", version = "0.22.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.21.0" } -noodles-tabix = { path = "../noodles-tabix", version = "0.24.0" } +noodles-csi = { path = "../noodles-csi", version = "0.22.0" } +noodles-tabix = { path = "../noodles-tabix", version = "0.25.0" } percent-encoding.workspace = true futures = { workspace = true, optional = true, features = ["std"] } diff --git a/noodles/CHANGELOG.md b/noodles/CHANGELOG.md index 237463cc7..835b57bdf 100644 --- a/noodles/CHANGELOG.md +++ b/noodles/CHANGELOG.md @@ -1,5 +1,18 @@ # Changelog +## 0.44.0 - 2023-07-06 + + * [noodles-bam 0.38.0](https://github.com/zaeleus/noodles/blob/noodles-bam-0.38.0/noodles-bam/CHANGELOG.md) + * [noodles-bcf 0.31.0](https://github.com/zaeleus/noodles/blob/noodles-bcf-0.31.0/noodles-bcf/CHANGELOG.md) + * [noodles-cram 0.35.0](https://github.com/zaeleus/noodles/blob/noodles-cram-0.35.0/noodles-cram/CHANGELOG.md) + * [noodles-csi 0.22.0](https://github.com/zaeleus/noodles/blob/noodles-csi-0.22.0/noodles-csi/CHANGELOG.md) + * [noodles-gff 0.16.0](https://github.com/zaeleus/noodles/blob/noodles-gff-0.16.0/noodles-gff/CHANGELOG.md) + * [noodles-gtf 0.14.0](https://github.com/zaeleus/noodles/blob/noodles-gtf-0.14.0/noodles-gtf/CHANGELOG.md) + * [noodles-sam 0.35.0](https://github.com/zaeleus/noodles/blob/noodles-sam-0.35.0/noodles-sam/CHANGELOG.md) + * [noodles-tabix 0.25.0](https://github.com/zaeleus/noodles/blob/noodles-tabix-0.25.0/noodles-tabix/CHANGELOG.md) + * [noodles-util 0.16.0](https://github.com/zaeleus/noodles/blob/noodles-util-0.16.0/noodles-util/CHANGELOG.md) + * [noodles-vcf 0.34.0](https://github.com/zaeleus/noodles/blob/noodles-vcf-0.34.0/noodles-vcf/CHANGELOG.md) + ## 0.43.0 - 2023-06-29 * [noodles-bam 0.37.0](https://github.com/zaeleus/noodles/blob/noodles-bam-0.37.0/noodles-bam/CHANGELOG.md) diff --git a/noodles/Cargo.toml b/noodles/Cargo.toml index eb320ec83..f603e14d5 100644 --- a/noodles/Cargo.toml +++ b/noodles/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles" -version = "0.43.0" +version = "0.44.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -12,21 +12,21 @@ documentation = "https://docs.rs/noodles" readme = "../README.md" [dependencies] -noodles-bam = { path = "../noodles-bam", version = "0.37.0", optional = true } -noodles-bcf = { path = "../noodles-bcf", version = "0.30.0", optional = true } +noodles-bam = { path = "../noodles-bam", version = "0.38.0", optional = true } +noodles-bcf = { path = "../noodles-bcf", version = "0.31.0", optional = true } noodles-bed = { path = "../noodles-bed", version = "0.10.0", optional = true } noodles-bgzf = { path = "../noodles-bgzf", version = "0.22.0", optional = true } noodles-core = { path = "../noodles-core", version = "0.12.0", optional = true } -noodles-cram = { path = "../noodles-cram", version = "0.34.0", optional = true } -noodles-csi = { path = "../noodles-csi", version = "0.21.0", optional = true } +noodles-cram = { path = "../noodles-cram", version = "0.35.0", optional = true } +noodles-csi = { path = "../noodles-csi", version = "0.22.0", optional = true } noodles-fasta = { path = "../noodles-fasta", version = "0.25.0", optional = true } noodles-fastq = { path = "../noodles-fastq", version = "0.8.0", optional = true } -noodles-gff = { path = "../noodles-gff", version = "0.15.0", optional = true } -noodles-gtf = { path = "../noodles-gtf", version = "0.13.0", optional = true } +noodles-gff = { path = "../noodles-gff", version = "0.16.0", optional = true } +noodles-gtf = { path = "../noodles-gtf", version = "0.14.0", optional = true } noodles-htsget = { path = "../noodles-htsget", version = "0.2.0", optional = true } -noodles-sam = { path = "../noodles-sam", version = "0.34.0", optional = true } -noodles-tabix = { path = "../noodles-tabix", version = "0.24.0", optional = true } -noodles-vcf = { path = "../noodles-vcf", version = "0.33.0", optional = true } +noodles-sam = { path = "../noodles-sam", version = "0.35.0", optional = true } +noodles-tabix = { path = "../noodles-tabix", version = "0.25.0", optional = true } +noodles-vcf = { path = "../noodles-vcf", version = "0.34.0", optional = true } [features] default = []