Got "marker" error when running main.py

[kxhit]

Hi! @yunshengb Thanks for your code!

I run main.py and got error at test(). Could you help me? Thanks!!!
Logs:

graph embedding 0.88906
[ 0.10863562 0.08224115 -0.00754932 0.06741448 0.16102181 0.00956849
0.12104003 -0.01132082 0.17263308 -0.08167651 -0.04887944 0.00461488
-0.02077552 -0.11411279 0.00751702 -0.03882935]
Evaluating...
Saved to /media/work/3D/SimGNN/baiyunshen/SimGNN/result/aids700nef/mse/ged_mse_aids700nef_astar_beam1_beam2_beam5_beam10_beam20_beam40_beam80_hungarian_vj_siamese_regression_norm.png
Saved to /media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/logs/siamese_regression_aids700nef_2019-08-30T01:22:40/ged_mse_aids700nef_astar_beam1_beam2_beam5_beam10_beam20_beam40_beam80_hungarian_vj_siamese_regression_norm.png
Saved to /media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/logs/siamese_regression_aids700nef_2019-08-30T01:22:40/ged_mse_aids700nef_astar_beam1_beam2_beam5_beam10_beam20_beam40_beam80_hungarian_vj_siamese_regression_norm.eps
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/matplotlib/markers.py", line 248, in set_marker
Path(marker)
File "/usr/lib/python3/dist-packages/matplotlib/path.py", line 137, in init
vertices = np.asarray(vertices, np.float_)
File "/home/kx/venv/lib/python3.5/site-packages/numpy/core/_asarray.py", line 85, in asarray
return array(a, dtype, copy=False, order=order)
ValueError: could not convert string to float: 'X'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/main.py", line 44, in
main()
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/main.py", line 36, in main
test(data, eval, model, saver, sess, val_results_dict)
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/train.py", line 71, in test
model.get_eval_metrics_for_test(), saver)
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/eval.py", line 92, in eval_for_test
eps_dir)
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/eval.py", line 156, in _eval
self.norms, plot, eps_dir=eps_dir)
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/../../src/exp.py", line 351, in plot_preck
False, plot_results, eps_dir)
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/../../src/exp.py", line 381, in plot_preck_helper
**get_plotting_arg(args2, model))
File "/usr/lib/python3/dist-packages/matplotlib/pyplot.py", line 3251, in scatter
edgecolors=edgecolors, data=data, **kwargs)
File "/usr/lib/python3/dist-packages/matplotlib/init.py", line 1814, in inner
return func(ax, *args, **kwargs)
File "/usr/lib/python3/dist-packages/matplotlib/axes/_axes.py", line 3877, in scatter
marker_obj = mmarkers.MarkerStyle(marker)
File "/usr/lib/python3/dist-packages/matplotlib/markers.py", line 171, in init
self.set_marker(marker)
File "/usr/lib/python3/dist-packages/matplotlib/markers.py", line 252, in set_marker
' {0}'.format(marker))
ValueError: Unrecognized marker style X

[kxhit]

Maybe the matplotlib version. Solved by changing "X" -> "x", "P" ->"p".

[kxhit]

New error occurred.

AIDS700nefData_test loaded from /media/work/3D/SimGNN/baiyunshen/SimGNN/save/AIDS700nefData_test with 140 graphs
/media/work/3D/SimGNN/baiyunshen/SimGNN/result/aids700nef/ged/ged_ged_mat_aids700nef_astar_2018-06-27T19:38:42_qilin_10cpus.npy
/media/work/3D/SimGNN/baiyunshen/SimGNN/result/aids700nef/time/ged_time_mat_aids700nef_astar_2018-06-27T19:38:42_qilin_10cpus.npy
Traceback (most recent call last):
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/main.py", line 44, in
main()
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/main.py", line 36, in main
test(data, eval, model, saver, sess, val_results_dict)
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/train.py", line 71, in test
model.get_eval_metrics_for_test(), saver)
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/eval.py", line 92, in eval_for_test
eps_dir)
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/eval.py", line 116, in _eval
rs[FLAGS.model], eps_dir + '/gt_rk')
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/../../src/exp.py", line 1439, in comb_gt_rk
gs_rank = gs_rank + [train_data.graphs[j] for j in gids_rank]
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/../../src/exp.py", line 1439, in
gs_rank = gs_rank + [train_data.graphs[j] for j in gids_rank]
TypeError: only integer scalar arrays can be converted to a scalar index

[kxhit]

Solved by changing "j" -> "int(j)"

[kxhit]

Got new errors.

AIDS700nefData_test loaded from /media/work/3D/SimGNN/baiyunshen/SimGNN/save/AIDS700nefData_test with 140 graphs
/media/work/3D/SimGNN/baiyunshen/SimGNN/result/aids700nef/ged/ged_ged_mat_aids700nef_astar_2018-06-27T19:38:42_qilin_10cpus.npy
/media/work/3D/SimGNN/baiyunshen/SimGNN/result/aids700nef/time/ged_time_mat_aids700nef_astar_2018-06-27T19:38:42_qilin_10cpus.npy
Traceback (most recent call last):
File "main.py", line 44, in
main()
File "main.py", line 36, in main
test(data, eval, model, saver, sess, val_results_dict)
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/train.py", line 71, in test
model.get_eval_metrics_for_test(), saver)
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/eval.py", line 92, in eval_for_test
eps_dir)
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/eval.py", line 116, in _eval
rs[FLAGS.model], eps_dir + '/gt_rk')
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/../../src/exp.py", line 1454, in comb_gt_rk
[get_text_label_small(r, i, j, norm, False, dataset, gids_groundtruth) for j in gids_groundtruth]
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/../../src/exp.py", line 1454, in
[get_text_label_small(r, i, j, norm, False, dataset, gids_groundtruth) for j in gids_groundtruth]
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/../../src/exp.py", line 1138, in get_text_label_small
ged_str = get_ged_select_norm_str(r, qid, gid, norm)
File "/media/work/3D/SimGNN/baiyunshen/SimGNN/model/Siamese/../../src/exp.py", line 770, in get_ged_select_norm_str
return '{:.2f}({})'.format(norm_ged, int(ged))
TypeError: non-empty format string passed to object.format