diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index b45538ca7..ce440a155 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -35,7 +35,7 @@ npm install
 To run Repomix locally:
 
 ```bash
-npm run cli-run
+npm run repomix
 ```
 
 ### Docker Usage
diff --git a/package.json b/package.json
index 68d5c06a5..e3cb2317d 100644
--- a/package.json
+++ b/package.json
@@ -27,7 +27,9 @@
     "lint-secretlint": "secretlint \"**/*\" --secretlintignore .gitignore",
     "test": "vitest",
     "test-coverage": "vitest run --coverage",
-    "cli-run": "npm run build && node --trace-warnings bin/repomix.cjs",
+    "repomix": "npm run build && node --trace-warnings bin/repomix.cjs",
+    "repomix-src": "npm run repomix -- --include 'src,tests'",
+    "repomix-website": "npm run repomix -- --include 'website'",
     "npm-publish": "npm run lint && npm run test-coverage && npm run build && npm publish",
     "npm-release-patch": "npm version patch && npm run npm-publish",
     "npm-release-minor": "npm version minor && npm run npm-publish",
diff --git a/src/cli/cliSpinner.ts b/src/cli/cliSpinner.ts
index 49d1cce12..1da1ab263 100644
--- a/src/cli/cliSpinner.ts
+++ b/src/cli/cliSpinner.ts
@@ -1,18 +1,25 @@
 import cliSpinners from 'cli-spinners';
 import logUpdate from 'log-update';
 import pc from 'picocolors';
+import { logger } from '../shared/logger.js';
 
 class Spinner {
   private spinner = cliSpinners.dots;
   private message: string;
   private currentFrame = 0;
   private interval: ReturnType<typeof setInterval> | null = null;
+  private isEnabled: boolean;
 
   constructor(message: string) {
     this.message = message;
+    this.isEnabled = !logger.isVerboseEnabled();
   }
 
   start(): void {
+    if (!this.isEnabled) {
+      return;
+    }
+
     const frames = this.spinner.frames;
     const framesLength = frames.length;
     this.interval = setInterval(() => {
@@ -23,6 +30,10 @@ class Spinner {
   }
 
   update(message: string): void {
+    if (!this.isEnabled) {
+      return;
+    }
+
     this.message = message;
   }
 
diff --git a/src/core/file/fileProcess.ts b/src/core/file/fileProcess.ts
index 18bea4d14..0ba050823 100644
--- a/src/core/file/fileProcess.ts
+++ b/src/core/file/fileProcess.ts
@@ -40,6 +40,7 @@ export const processFiles = async (
         runTask(task).then((result) => {
           completedTasks++;
           progressCallback(`Processing file... (${completedTasks}/${totalTasks}) ${pc.dim(task.rawFile.path)}`);
+          logger.trace(`Processing file... (${completedTasks}/${totalTasks}) ${task.rawFile.path}`);
           return result;
         }),
       ),
diff --git a/src/core/metrics/calculateAllFileMetrics.ts b/src/core/metrics/calculateAllFileMetrics.ts
index 7c301a25a..51548e980 100644
--- a/src/core/metrics/calculateAllFileMetrics.ts
+++ b/src/core/metrics/calculateAllFileMetrics.ts
@@ -41,6 +41,7 @@ export const calculateAllFileMetrics = async (
         runTask(task).then((result) => {
           completedTasks++;
           progressCallback(`Calculating metrics... (${completedTasks}/${task.totalFiles}) ${pc.dim(task.file.path)}`);
+          logger.trace(`Calculating metrics... (${completedTasks}/${task.totalFiles}) ${task.file.path}`);
           return result;
         }),
       ),
diff --git a/src/core/security/securityCheck.ts b/src/core/security/securityCheck.ts
index 81242ca84..628212050 100644
--- a/src/core/security/securityCheck.ts
+++ b/src/core/security/securityCheck.ts
@@ -43,6 +43,7 @@ export const runSecurityCheck = async (
         runTask(task).then((result) => {
           completedTasks++;
           progressCallback(`Running security check... (${completedTasks}/${totalTasks}) ${pc.dim(task.filePath)}`);
+          logger.trace(`Running security check... (${completedTasks}/${totalTasks}) ${task.filePath}`);
           return result;
         }),
       ),
diff --git a/src/shared/logger.ts b/src/shared/logger.ts
index d4b8d9ad4..58a1043cd 100644
--- a/src/shared/logger.ts
+++ b/src/shared/logger.ts
@@ -8,6 +8,10 @@ class Logger {
     this.isVerbose = value;
   }
 
+  isVerboseEnabled(): boolean {
+    return this.isVerbose;
+  }
+
   error(...args: unknown[]) {
     console.error(pc.red(this.formatArgs(args)));
   }
diff --git a/website/client/src/en/guide/development/index.md b/website/client/src/en/guide/development/index.md
index 2320e0544..68320f2ec 100644
--- a/website/client/src/en/guide/development/index.md
+++ b/website/client/src/en/guide/development/index.md
@@ -12,7 +12,7 @@ npm install
 
 ```bash
 # Run CLI
-npm run cli-run
+npm run repomix
 
 # Run tests
 npm run test
diff --git a/website/client/src/en/guide/development/setup.md b/website/client/src/en/guide/development/setup.md
index ac67f2c0e..04881d659 100644
--- a/website/client/src/en/guide/development/setup.md
+++ b/website/client/src/en/guide/development/setup.md
@@ -17,7 +17,7 @@ cd repomix
 npm install
 
 # Run CLI
-npm run cli-run
+npm run repomix
 ```
 
 ## Docker Development
diff --git a/website/client/src/es/guide/development/index.md b/website/client/src/es/guide/development/index.md
index 34fd7bf3f..e75d816a7 100644
--- a/website/client/src/es/guide/development/index.md
+++ b/website/client/src/es/guide/development/index.md
@@ -12,7 +12,7 @@ npm install
 
 ```bash
 # Ejecutar CLI
-npm run cli-run
+npm run repomix
 
 # Ejecutar pruebas
 npm run test
diff --git a/website/client/src/es/guide/development/setup.md b/website/client/src/es/guide/development/setup.md
index 871b07c34..fba8829f0 100644
--- a/website/client/src/es/guide/development/setup.md
+++ b/website/client/src/es/guide/development/setup.md
@@ -17,7 +17,7 @@ cd repomix
 npm install
 
 # Ejecutar CLI
-npm run cli-run
+npm run repomix
 ```
 
 ## Desarrollo con Docker
diff --git a/website/client/src/ja/guide/development/index.md b/website/client/src/ja/guide/development/index.md
index 44aeb511f..b8bbd3fb8 100644
--- a/website/client/src/ja/guide/development/index.md
+++ b/website/client/src/ja/guide/development/index.md
@@ -12,7 +12,7 @@ npm install
 
 ```bash
 # CLIを実行
-npm run cli-run
+npm run repomix
 
 # テストを実行
 npm run test
diff --git a/website/client/src/ja/guide/development/setup.md b/website/client/src/ja/guide/development/setup.md
index b9ea0a0a1..2db6d690f 100644
--- a/website/client/src/ja/guide/development/setup.md
+++ b/website/client/src/ja/guide/development/setup.md
@@ -17,7 +17,7 @@ cd repomix
 npm install
 
 # CLIの実行
-npm run cli-run
+npm run repomix
 ```
 
 ## Docker開発
diff --git a/website/client/src/ko/guide/development/index.md b/website/client/src/ko/guide/development/index.md
index 6a0e325bf..e900dd336 100644
--- a/website/client/src/ko/guide/development/index.md
+++ b/website/client/src/ko/guide/development/index.md
@@ -12,7 +12,7 @@ npm install
 
 ```bash
 # CLI 실행
-npm run cli-run
+npm run repomix
 
 # 테스트 실행
 npm run test
diff --git a/website/client/src/ko/guide/development/setup.md b/website/client/src/ko/guide/development/setup.md
index 9b5f849ec..14d8c946c 100644
--- a/website/client/src/ko/guide/development/setup.md
+++ b/website/client/src/ko/guide/development/setup.md
@@ -17,7 +17,7 @@ cd repomix
 npm install
 
 # CLI 실행
-npm run cli-run
+npm run repomix
 ```
 
 ## Docker 개발
diff --git a/website/client/src/pt-br/guide/development/index.md b/website/client/src/pt-br/guide/development/index.md
index db8582fcb..93c4a1e4a 100644
--- a/website/client/src/pt-br/guide/development/index.md
+++ b/website/client/src/pt-br/guide/development/index.md
@@ -12,7 +12,7 @@ npm install
 
 ```bash
 # Executar CLI
-npm run cli-run
+npm run repomix
 
 # Executar testes
 npm run test
diff --git a/website/client/src/pt-br/guide/development/setup.md b/website/client/src/pt-br/guide/development/setup.md
index bc55c05d7..0e5028c58 100644
--- a/website/client/src/pt-br/guide/development/setup.md
+++ b/website/client/src/pt-br/guide/development/setup.md
@@ -17,7 +17,7 @@ cd repomix
 npm install
 
 # Executar CLI
-npm run cli-run
+npm run repomix
 ```
 
 ## Desenvolvimento com Docker
diff --git a/website/client/src/zh-cn/guide/development/index.md b/website/client/src/zh-cn/guide/development/index.md
index 189f793a7..60ec45d65 100644
--- a/website/client/src/zh-cn/guide/development/index.md
+++ b/website/client/src/zh-cn/guide/development/index.md
@@ -12,7 +12,7 @@ npm install
 
 ```bash
 # 运行 CLI
-npm run cli-run
+npm run repomix
 
 # 运行测试
 npm run test
diff --git a/website/client/src/zh-cn/guide/development/setup.md b/website/client/src/zh-cn/guide/development/setup.md
index 5a19ce927..38720df60 100644
--- a/website/client/src/zh-cn/guide/development/setup.md
+++ b/website/client/src/zh-cn/guide/development/setup.md
@@ -17,7 +17,7 @@ cd repomix
 npm install
 
 # 运行 CLI
-npm run cli-run
+npm run repomix
 ```
 
 ## Docker 开发环境