From 9656651db921f0c439cc1b2daf791217d6454a3c Mon Sep 17 00:00:00 2001
From: Matiss Ozols <mo11@sanger.ac.uk>
Date: Fri, 1 Sep 2023 15:35:08 +0100
Subject: [PATCH] typo

---
 bin/concordance_calculations_donor_exclusive_read_level.py | 2 +-
 modules/nf-core/modules/genotypes/main.nf                  | 2 +-
 modules/nf-core/modules/subset_genotype/main.nf            | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/bin/concordance_calculations_donor_exclusive_read_level.py b/bin/concordance_calculations_donor_exclusive_read_level.py
index d4393adb..3b336c3c 100755
--- a/bin/concordance_calculations_donor_exclusive_read_level.py
+++ b/bin/concordance_calculations_donor_exclusive_read_level.py
@@ -716,6 +716,6 @@ def donor_exclusive_sites(exclusive_don_variants2):
     # cell_concordance_table = conc_table(donor_assignments_table,cell_assignments_table,exclusive_don_variants,exclusive_cell_variants)
     result = pd.DataFrame(cell_concordance_table).T
     if len(result)>0:
-        result.to_csv('cell_concordance_table_noA2G.tsv',sep='\t')
+        result.to_csv('cell_concordance_table.tsv',sep='\t')
     print('Processing Done')
     
diff --git a/modules/nf-core/modules/genotypes/main.nf b/modules/nf-core/modules/genotypes/main.nf
index 8221b2a1..5a152aa6 100755
--- a/modules/nf-core/modules/genotypes/main.nf
+++ b/modules/nf-core/modules/genotypes/main.nf
@@ -273,7 +273,7 @@ process ASSIGN_DONOR_FROM_PANEL
 {
   // sum gtcheck discrepancy scores from multiple ouputput files of the same panel
   tag "${pool_panel_id}"
-  label 'process_low'
+  label 'process_medium'
   publishDir  path: "${params.outdir}/gtmatch/${pool_id}",
           pattern: "*.csv",
           mode: "${params.copy_mode}",
diff --git a/modules/nf-core/modules/subset_genotype/main.nf b/modules/nf-core/modules/subset_genotype/main.nf
index 4c107b4f..cba3ff7f 100755
--- a/modules/nf-core/modules/subset_genotype/main.nf
+++ b/modules/nf-core/modules/subset_genotype/main.nf
@@ -209,7 +209,7 @@ process SUBSET_GENOTYPE2 {
 
 process JOIN_CHROMOSOMES{
     tag "${samplename}"
-    label 'process_small'
+    label 'process_medium'
     publishDir "${params.outdir}/subset_genotypes/", mode: "${params.copy_mode}", pattern: "${samplename}.${sample_subset_file}.subset.vcf.gz"
 
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {