CITATIONS.md

yascp: Citations

Would appreciate if you mention the use of this repo in manuscript: > Ozols, M. et al. 2023. YASCP (Yet Another Single Cell Pipeline): GitHub. https://github.com/wtsi-hgi/yascp

Pipeline tools

• Cellbender

• cellSNP

• souporcell

• Vireo

• Azimuth

• Cellsnp

• Sccaf

• Harmony

• BBKNN

• Lisi

• Scrublet

Software packaging/containerisation tools

• Docker

• Singularity

  Kurtzer GM, Sochat V, Bauer MW. Singularity: Scientific containers for mobility of compute. PLoS One. 2017 May 11;12(5):e0177459. doi: 10.1371/journal.pone.0177459. eCollection 2017. PubMed PMID: 28494014; PubMed Central PMCID: PMC5426675.