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main.nf
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main.nf
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#!/usr/bin/env nextflow
/*
========================================================================================
nf-core/coloc
========================================================================================
Github : https://github.com/nf-core/coloc
Website: https://nf-co.re/coloc
Slack : https://nfcore.slack.com/channels/coloc
----------------------------------------------------------------------------------------
*/
nextflow.enable.dsl = 2
/*
========================================================================================
PARAMETER VALUES
========================================================================================
*/
params.eqtl_snps = "/lustre/scratch123/hgi/projects/bhf_finemap/summary_stats/eQTLs/snp_pos.txt.gz"
/*
========================================================================================
VALIDATE & PRINT PARAMETER SUMMARY
========================================================================================
*/
/*
========================================================================================
NAMED WORKFLOW FOR PIPELINE
========================================================================================
*/
include { COLOC } from './workflows/coloc'
//
// WORKFLOW: Run main nf-core/coloc analysis pipeline
//
workflow NFCORE_COLOC {
COLOC ()
}
/*
========================================================================================
RUN ALL WORKFLOWS
========================================================================================
*/
//
// WORKFLOW: Execute a single named workflow for the pipeline
// See: https://github.com/nf-core/rnaseq/issues/619
//
workflow {
NFCORE_COLOC ()
}
/*
========================================================================================
THE END
========================================================================================
*/