NAMESPACE

# Generated by roxygen2: do not edit by hand

export("filterCell<-")
export("filterGene<-")
export("filterQC<-")
export("sf<-")
export("useFilter<-")
export(addPath)
export(addPheno)
export(applyMVP)
export(clipboard)
export(clustLouvain)
export(colorGradient)
export(diffuse)
export(diffuseMat2)
export(diffuseProj)
export(doDE)
export(doDESeq)
export(eigenvals)
export(eigenvecs)
export(enrichr)
export(estSizeFact)
export(excludeCells)
export(exportToMatlab)
export(facsPlot)
export(fastDist)
export(filterCell)
export(filterGene)
export(filterQC)
export(findCells)
export(findGene)
export(findLouvain)
export(findPath)
export(geneDistribution)
export(geneID2Name)
export(geneName2id)
export(getDiffMap)
export(getIsomap)
export(getMST)
export(getMVP)
export(getPCA)
export(getPaths)
export(getTSNE)
export(ggCol)
export(heatmap.gottgens)
export(heatmap.minus)
export(listEnrichrDbs)
export(logVarGenes)
export(markGOI)
export(memls)
export(mst)
export(multiGenes)
export(newSCD)
export(performQC)
export(plotGene)
export(plotGeneProfile)
export(plotLegend)
export(plotQC)
export(plotTechVar)
export(printEnrich)
export(printGene)
export(qc)
export(read.qPCR)
export(removePath)
export(resetCells)
export(runPCA)
export(runTSNE)
export(selectCells)
export(selectVariableGenes)
export(selectionTray)
export(sf)
export(slidingAv)
export(sparseMarkov)
export(spikes)
export(submap)
export(techVar)
export(useFilter)
export(writeGeneList)
exportClasses(DiffusionMap)
exportClasses(Isomap)
exportClasses(PCA)
exportClasses(SCD)
exportClasses(TSNE)
exportMethods("filterCell<-")
exportMethods("filterGene<-")
exportMethods("filterQC<-")
exportMethods("useFilter<-")
exportMethods(addPath)
exportMethods(addPheno)
exportMethods(counts)
exportMethods(diffuse)
exportMethods(dim)
exportMethods(eigenvals)
exportMethods(eigenvecs)
exportMethods(exprs)
exportMethods(fData)
exportMethods(filterCell)
exportMethods(filterGene)
exportMethods(filterQC)
exportMethods(findPath)
exportMethods(getDiffMap)
exportMethods(getIsomap)
exportMethods(getMST)
exportMethods(getPCA)
exportMethods(getPaths)
exportMethods(getTSNE)
exportMethods(loadings)
exportMethods(mst)
exportMethods(pData)
exportMethods(plot)
exportMethods(plot3)
exportMethods(runPCA)
exportMethods(runTSNE)
exportMethods(selectCells)
exportMethods(selectVariableGenes)
exportMethods(techVar)
exportMethods(useFilter)
import(Biobase)
import(Rtsne)
import(ggplot2)
import(grDevices)
import(graphics)
import(methods)
import(utils)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(R.matlab,writeMat)
importFrom(RColorBrewer,brewer.pal)
importFrom(cba,order.optimal)
importFrom(coin,wilcox_test)
importFrom(grDevices,hcl)
importFrom(httr,GET)
importFrom(httr,POST)
importFrom(igraph,E)
importFrom(igraph,cluster_louvain)
importFrom(igraph,communities)
importFrom(igraph,get.diameter)
importFrom(igraph,get.edgelist)
importFrom(igraph,get.shortest.paths)
importFrom(igraph,graph.adjacency)
importFrom(igraph,layout_with_fr)
importFrom(igraph,minimum.spanning.tree)
importFrom(mgcv,gam)
importFrom(rARPACK,eigs)
importFrom(rgl,lines3d)
importFrom(rgl,open3d)
importFrom(rgl,par3d)
importFrom(rgl,plot3d)
importFrom(rgl,points3d)
importFrom(rgl,r3dDefaults)
importFrom(rgl,rgl.cur)
importFrom(rgl,rgl.postscript)
importFrom(rgl,segments3d)
importFrom(rgl,selectpoints3d)
importFrom(rgl,text3d)
importFrom(rjson,fromJSON)
importFrom(statmod,glmgam.fit)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,coefficients)
importFrom(stats,cor)
importFrom(stats,density)
importFrom(stats,dist)
importFrom(stats,filter)
importFrom(stats,fitted.values)
importFrom(stats,gaussian)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,nls)
importFrom(stats,order.dendrogram)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,predict.lm)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,reorder)
importFrom(stats,sd)
importFrom(stats,var)
importMethodsFrom(BiocGenerics,counts)