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1_data_s3_assimilate.yml
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packages:
- scipiper
file_extensions:
- ind
target_default: all_s3_assimilate
include:
- 1_all_raw_data.yml
sources:
- 1_data_s3_assimilate/src/parse_dow_files.R
- 1_data_s3_assimilate/src/parse_uw_files.R
- 1_data_s3_assimilate/src/parse_vermillion_files.R
targets:
all_s3_assimilate: #this should be the final things
depends:
- lib/cfg/s3_config.yml
- 1_data_s3_assimilate/out/long_term_ntl.rds.ind
- 1_data_s3_assimilate/out/long_term_ntl.rds
- 1_data_s3_assimilate/out/mendota_daily_buoy.rds.ind
- 1_data_s3_assimilate/out/mendota_daily_buoy.rds
- 1_data_s3_assimilate/out/mendota_temps_long.rds.ind
- 1_data_s3_assimilate/out/mendota_temps_long.rds
- 1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind
- 1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds
- 1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind
- 1_data_s3_assimilate/out/MPCA_temp_data_all.rds
- 1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind
- 1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds
- 1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind
- 1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds
- 1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind
- 1_data_s3_assimilate/out/Vermilion_Logger_2014.rds
- 1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind
- 1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds
- 1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind
- 1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds
- 1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind
- 1_data_s3_assimilate/out/Sand_Bay_All_2016.rds
- 1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind
- 1_data_s3_assimilate/out/Sand_Bay_all_2015.rds
- 1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind
- 1_data_s3_assimilate/out/Sand_Bay_all_2014.rds
- 1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind
- 1_data_s3_assimilate/out/Sand_Bay_all_2013.rds
- 1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind
- 1_data_s3_assimilate/out/Open_Water_Logger_2013.rds
- 1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind
- 1_data_s3_assimilate/out/ML_observed_temperatures.rds
- 1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind
- 1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds
- 1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind
- 1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds
- 1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind
- 1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds
- 1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind
- 1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds
- 1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind
- 1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds
- 1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind
- 1_data_s3_assimilate/out/Lake_Vermilion_2016.rds
- 1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind
- 1_data_s3_assimilate/out/Joes_Dock_2013.rds
- 1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind
- 1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds
- 1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind
- 1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds
- 1_data_s3_assimilate/out/Leech_logger_temps_06_16.rds.ind
- 1_data_s3_assimilate/out/Leech_logger_temps_06_16.rds
1_data_s3_assimilate/out/long_term_ntl.rds.ind:
command: parse_long_term_ntl(outind=target_name,
inind = '1_all_raw_data/in/long_term_ntl.csv.ind')
1_data_s3_assimilate/out/long_term_ntl.rds:
command: s3_get('1_data_s3_assimilate/out/long_term_ntl.rds.ind')
1_data_s3_assimilate/out/mendota_daily_buoy.rds.ind:
command: parse_mendota_daily_buoy(outind=target_name,
inind = '1_all_raw_data/in/mendota_daily_buoy.csv.ind')
1_data_s3_assimilate/out/mendota_daily_buoy.rds:
command: s3_get('1_data_s3_assimilate/out/mendota_daily_buoy.rds.ind')
1_data_s3_assimilate/out/mendota_temps_long.rds.ind:
command: parse_mendota_temps_long(outind=target_name,
inind = '1_all_raw_data/in/mendota_temps_long.csv.ind')
1_data_s3_assimilate/out/mendota_temps_long.rds:
command: s3_get('1_data_s3_assimilate/out/mendota_temps_long.rds.ind')
1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind:
command: parse_MN_fisheries_all_temp_data_Jan2018(outind=target_name,
inind = '1_all_raw_data/in/MN_fisheries_all_temp_data_Jan2018.txt.ind')
1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds:
command: s3_get('1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind')
1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind:
command: parse_MPCA_temp_data_all(outind=target_name,
inind = '1_all_raw_data/in/MPCA_temp_data_all.tsv.ind')
1_data_s3_assimilate/out/MPCA_temp_data_all.rds:
command: s3_get('1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind')
1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind:
command: parse_URL_Temp_Logger_2006_to_2017(outind=target_name,
inind = '1_all_raw_data/in/URL_Temp_Logger_2006_to_2017.accdb.ind')
1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds:
command: s3_get('1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind')
1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind:
command: parse_vermillion_repeated_tempDO_longformat(outind=target_name,
inind = '1_all_raw_data/in/vermillion_repeated_tempDO_longformat.xlsx.ind')
1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds:
command: s3_get('1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind')
1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind:
command: parse_Vermilion_Logger_2014(outind=target_name,
inind = '1_all_raw_data/in/Vermilion_Logger_2014.csv.ind')
1_data_s3_assimilate/out/Vermilion_Logger_2014.rds:
command: s3_get('1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind')
1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind:
command: parse_Verm_annual_tempDO_longformat(outind=target_name,
inind = '1_all_raw_data/in/Verm_annual_tempDO_longformat.xlsx.ind')
1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds:
command: s3_get('1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind')
1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind:
command: parse_Temp_Logger_Data_2015(outind=target_name,
inind = '1_all_raw_data/in/Temp_Logger_Data_2015.xlsx.ind')
1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds:
command: s3_get('1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind')
1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind:
command: parse_Sand_Bay_All_2016(outind=target_name,
inind = '1_all_raw_data/in/Sand_Bay_All_2016.xlsx.ind')
1_data_s3_assimilate/out/Sand_Bay_All_2016.rds:
command: s3_get('1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind')
1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind:
command: parse_Sand_Bay_all_2015(outind=target_name,
inind = '1_all_raw_data/in/Sand_Bay_all_2015.xlsx.ind')
1_data_s3_assimilate/out/Sand_Bay_all_2015.rds:
command: s3_get('1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind')
1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind:
command: parse_Sand_Bay_all_2014(outind=target_name,
inind = '1_all_raw_data/in/Sand_Bay_all_2014.xlsx.ind')
1_data_s3_assimilate/out/Sand_Bay_all_2014.rds:
command: s3_get('1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind')
1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind:
command: parse_Sand_Bay_all_2013(outind=target_name,
inind = '1_all_raw_data/in/Sand_Bay_all_2013.xlsx.ind')
1_data_s3_assimilate/out/Sand_Bay_all_2013.rds:
command: s3_get('1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind')
1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind:
command: parse_Open_Water_Logger_2013(outind=target_name,
inind = '1_all_raw_data/in/Open_Water_Logger_2013.csv.ind')
1_data_s3_assimilate/out/Open_Water_Logger_2013.rds:
command: s3_get('1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind')
1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind:
command: parse_ML_observed_temperatures(outind=target_name,
inind = '1_all_raw_data/in/ML_observed_temperatures.txt.ind')
1_data_s3_assimilate/out/ML_observed_temperatures.rds:
command: s3_get('1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind')
1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind:
command: parse_LotW_WQ_Gretchen_H(outind=target_name,
inind = '1_all_raw_data/in/LotW_WQ_Gretchen_H.xlsx.ind')
1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds:
command: s3_get('1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind')
1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind:
command: parse_Logger_Temps_2011_Open_Water(outind=target_name,
inind = '1_all_raw_data/in/Logger_Temps_2011_Open_Water.xlsx.ind')
1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds:
command: s3_get('1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind')
1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind:
command: parse_Logger_Temps_2010_Open_Water(outind=target_name,
inind = '1_all_raw_data/in/Logger_Temps_2010_Open_Water.csv.ind')
1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds:
command: s3_get('1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind')
1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind:
command: parse_Logger_Temps_2009_Open_Water(outind=target_name,
inind = '1_all_raw_data/in/Logger_Temps_2009_Open_Water.csv.ind')
1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds:
command: s3_get('1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind')
1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind:
command: parse_Logger_Temps_2009_Joes_Dock(outind=target_name,
inind = '1_all_raw_data/in/Logger_Temps_2009_Joes_Dock.csv.ind')
1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds:
command: s3_get('1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind')
1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind:
command: parse_Lake_Vermilion_2016(outind=target_name,
inind = '1_all_raw_data/in/Lake_Vermilion_2016.csv.ind')
1_data_s3_assimilate/out/Lake_Vermilion_2016.rds:
command: s3_get('1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind')
1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind:
command: parse_Joes_Dock_2013(outind=target_name,
inind = '1_all_raw_data/in/Joes_Dock_2013.csv.ind')
1_data_s3_assimilate/out/Joes_Dock_2013.rds:
command: s3_get('1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind')
1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind:
command: parse_Joes_Dock_Logger_2012(outind=target_name,
inind = '1_all_raw_data/in/Joes_Dock_Logger_2012.xlsx.ind')
1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds:
command: s3_get('1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind')
1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind:
command: parse_Cass_lake_emperature_Logger_Database_2008_to_present(outind=target_name,
inind = '1_all_raw_data/in/Cass_lake_emperature_Logger_Database_2008_to_present.accdb.ind')
1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds:
command: s3_get('1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind')
1_data_s3_assimilate/out/Leech_logger_temps_06_16.rds.ind:
command: parse_Leech_logger_temps_06_16(outind=target_name,
inind = '1_all_raw_data/in/Leech_logger_temps_06_16.xls.ind')
1_data_s3_assimilate/out/Leech_logger_temps_06_16.rds:
command: s3_get('1_data_s3_assimilate/out/Leech_logger_temps_06_16.rds.ind')