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1_all_raw_data.yml
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packages:
- scipiper
file_extensions:
- ind
target_default: all_raw
sources: 1_all_raw_data/src/download_and_indicate.R
targets:
all_raw:
depends:
- 1_all_raw_data/out/long_term_ntl.csv.ind
- 1_all_raw_data/out/mendota_daily_buoy.csv.ind
- 1_all_raw_data/out/mendota_temps_long.csv.ind
- 1_all_raw_data/in/MN_fisheries_all_temp_data_Jan2018.txt.ind
- 1_all_raw_data/in/MN_fisheries_all_temp_data_Jan2018.txt
- 1_all_raw_data/in/MPCA_temp_data_all.tsv.ind
- 1_all_raw_data/in/MPCA_temp_data_all.tsv
- 1_all_raw_data/in/URL_Temp_Logger_2006_to_2017.accdb.ind
- 1_all_raw_data/in/URL_Temp_Logger_2006_to_2017.accdb
- 1_all_raw_data/in/vermillion_repeated_tempDO_longformat.xlsx.ind
- 1_all_raw_data/in/vermillion_repeated_tempDO_longformat.xlsx
- 1_all_raw_data/in/Vermilion_Logger_2014.csv.ind
- 1_all_raw_data/in/Vermilion_Logger_2014.csv
- 1_all_raw_data/in/Verm_annual_tempDO_longformat.xlsx.ind
- 1_all_raw_data/in/Verm_annual_tempDO_longformat.xlsx
- 1_all_raw_data/in/Temp_Logger_Data_2015.xlsx.ind
- 1_all_raw_data/in/Temp_Logger_Data_2015.xlsx
- 1_all_raw_data/in/Sand_Bay_All_2016.xlsx.ind
- 1_all_raw_data/in/Sand_Bay_All_2016.xlsx
- 1_all_raw_data/in/Sand_Bay_all_2015.xlsx.ind
- 1_all_raw_data/in/Sand_Bay_all_2015.xlsx
- 1_all_raw_data/in/Sand_Bay_all_2014.xlsx.ind
- 1_all_raw_data/in/Sand_Bay_all_2014.xlsx
- 1_all_raw_data/in/Sand_Bay_all_2013.xlsx.ind
- 1_all_raw_data/in/Sand_Bay_all_2013.xlsx
- 1_all_raw_data/in/Open_Water_Logger_2013.csv.ind
- 1_all_raw_data/in/Open_Water_Logger_2013.csv
- 1_all_raw_data/in/ML_observed_temperatures.txt.ind
- 1_all_raw_data/in/ML_observed_temperatures.txt
- 1_all_raw_data/in/LotW_WQ_Gretchen_H.xlsx.ind
- 1_all_raw_data/in/LotW_WQ_Gretchen_H.xlsx
- 1_all_raw_data/in/Logger_Temps_2011_Open_Water.xlsx.ind
- 1_all_raw_data/in/Logger_Temps_2011_Open_Water.xlsx
- 1_all_raw_data/in/Logger_Temps_2010_Open_Water.csv.ind
- 1_all_raw_data/in/Logger_Temps_2010_Open_Water.csv
- 1_all_raw_data/in/Logger_Temps_2009_Open_Water.csv.ind
- 1_all_raw_data/in/Logger_Temps_2009_Open_Water.csv
- 1_all_raw_data/in/Logger_Temps_2009_Joes_Dock.csv.ind
- 1_all_raw_data/in/Logger_Temps_2009_Joes_Dock.csv
- 1_all_raw_data/in/Lake_Vermilion_2016.csv.ind
- 1_all_raw_data/in/Lake_Vermilion_2016.csv
- 1_all_raw_data/in/Joes_Dock_2013.csv.ind
- 1_all_raw_data/in/Joes_Dock_2013.csv
- 1_all_raw_data/in/Joes_Dock_Logger_2012.xlsx.ind
- 1_all_raw_data/in/Joes_Dock_Logger_2012.xlsx
- 1_all_raw_data/in/Cass_lake_emperature_Logger_Database_2008_to_present.accdb.ind
- 1_all_raw_data/in/Cass_lake_emperature_Logger_Database_2008_to_present.accdb
- 1_all_raw_data/in/Leech_logger_temps_06_16.xls.ind
- 1_all_raw_data/in/Leech_logger_temps_06_16.xls
1_all_raw_data/in/MN_fisheries_all_temp_data_Jan2018.txt.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/MN_fisheries_all_temp_data_Jan2018.txt:
command: gd_get('1_all_raw_data/in/MN_fisheries_all_temp_data_Jan2018.txt.ind')
1_all_raw_data/in/MPCA_temp_data_all.tsv.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/MPCA_temp_data_all.tsv:
command: gd_get('1_all_raw_data/in/MPCA_temp_data_all.tsv.ind')
1_all_raw_data/in/URL_Temp_Logger_2006_to_2017.accdb.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/URL_Temp_Logger_2006_to_2017.accdb:
command: gd_get('1_all_raw_data/in/URL_Temp_Logger_2006_to_2017.accdb.ind')
1_all_raw_data/in/vermillion_repeated_tempDO_longformat.xlsx.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/vermillion_repeated_tempDO_longformat.xlsx:
command: gd_get('1_all_raw_data/in/vermillion_repeated_tempDO_longformat.xlsx.ind')
1_all_raw_data/in/Vermilion_Logger_2014.csv.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Vermilion_Logger_2014.csv:
command: gd_get('1_all_raw_data/in/Vermilion_Logger_2014.csv.ind')
1_all_raw_data/in/Verm_annual_tempDO_longformat.xlsx.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Verm_annual_tempDO_longformat.xlsx:
command: gd_get('1_all_raw_data/in/Verm_annual_tempDO_longformat.xlsx.ind')
1_all_raw_data/in/Temp_Logger_Data_2015.xlsx.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Temp_Logger_Data_2015.xlsx:
command: gd_get('1_all_raw_data/in/Temp_Logger_Data_2015.xlsx.ind')
1_all_raw_data/in/Sand_Bay_All_2016.xlsx.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Sand_Bay_All_2016.xlsx:
command: gd_get('1_all_raw_data/in/Sand_Bay_All_2016.xlsx.ind')
1_all_raw_data/in/Sand_Bay_all_2015.xlsx.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Sand_Bay_all_2015.xlsx:
command: gd_get('1_all_raw_data/in/Sand_Bay_all_2015.xlsx.ind')
1_all_raw_data/in/Sand_Bay_all_2014.xlsx.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Sand_Bay_all_2014.xlsx:
command: gd_get('1_all_raw_data/in/Sand_Bay_all_2014.xlsx.ind')
1_all_raw_data/in/Sand_Bay_all_2013.xlsx.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Sand_Bay_all_2013.xlsx:
command: gd_get('1_all_raw_data/in/Sand_Bay_all_2013.xlsx.ind')
1_all_raw_data/in/Open_Water_Logger_2013.csv.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Open_Water_Logger_2013.csv:
command: gd_get('1_all_raw_data/in/Open_Water_Logger_2013.csv.ind')
1_all_raw_data/in/ML_observed_temperatures.txt.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/ML_observed_temperatures.txt:
command: gd_get('1_all_raw_data/in/ML_observed_temperatures.txt.ind')
1_all_raw_data/in/LotW_WQ_Gretchen_H.xlsx.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/LotW_WQ_Gretchen_H.xlsx:
command: gd_get('1_all_raw_data/in/LotW_WQ_Gretchen_H.xlsx.ind')
1_all_raw_data/in/Logger_Temps_2011_Open_Water.xlsx.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Logger_Temps_2011_Open_Water.xlsx:
command: gd_get('1_all_raw_data/in/Logger_Temps_2011_Open_Water.xlsx.ind')
1_all_raw_data/in/Logger_Temps_2010_Open_Water.csv.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Logger_Temps_2010_Open_Water.csv:
command: gd_get('1_all_raw_data/in/Logger_Temps_2010_Open_Water.csv.ind')
1_all_raw_data/in/Logger_Temps_2009_Open_Water.csv.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Logger_Temps_2009_Open_Water.csv:
command: gd_get('1_all_raw_data/in/Logger_Temps_2009_Open_Water.csv.ind')
1_all_raw_data/in/Logger_Temps_2009_Joes_Dock.csv.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Logger_Temps_2009_Joes_Dock.csv:
command: gd_get('1_all_raw_data/in/Logger_Temps_2009_Joes_Dock.csv.ind')
1_all_raw_data/in/Lake_Vermilion_2016.csv.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Lake_Vermilion_2016.csv:
command: gd_get('1_all_raw_data/in/Lake_Vermilion_2016.csv.ind')
1_all_raw_data/in/Joes_Dock_2013.csv.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Joes_Dock_2013.csv:
command: gd_get('1_all_raw_data/in/Joes_Dock_2013.csv.ind')
1_all_raw_data/in/Joes_Dock_Logger_2012.xlsx.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Joes_Dock_Logger_2012.xlsx:
command: gd_get('1_all_raw_data/in/Joes_Dock_Logger_2012.xlsx.ind')
1_all_raw_data/in/Cass_lake_emperature_Logger_Database_2008_to_present.accdb.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Cass_lake_emperature_Logger_Database_2008_to_present.accdb:
command: gd_get('1_all_raw_data/in/Cass_lake_emperature_Logger_Database_2008_to_present.accdb.ind')
1_all_raw_data/in/Leech_logger_temps_06_16.xls.ind:
command: gd_confirm_posted(ind_file = target_name)
1_all_raw_data/in/Leech_logger_temps_06_16.xls:
command: gd_get('1_all_raw_data/in/Leech_logger_temps_06_16.xls.ind')
1_all_raw_data/out/long_term_ntl.csv.ind:
command: download_and_indicate(remote_ind = target_name, local_file = I("1_public_data_download/out/long_term_ntl.csv"),
url = I("https://lter.limnology.wisc.edu/sites/default/files/data/ntl29_v5.csv"))
1_all_raw_data/out/mendota_daily_buoy.csv.ind:
command: download_and_indicate(remote_ind = target_name, local_file = I("1_public_data_download/out/mendota_daily_buoy.csv"),
url = I("https://lter.limnology.wisc.edu/sites/default/files/data/ntl130_1_v5.csv"))
1_all_raw_data/out/mendota_temps_long.csv.ind:
command: download_and_indicate(remote_ind = target_name, local_file = I("1_public_data_download/out/mendota_temps_long.csv"),
url = I("https://lter.limnology.wisc.edu/sites/default/files/data/Lake_Mendota_temps_long.csv"))