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2022 v 2020 danRer11 tracks changed from using TF name to matrix identifier possibly in error #11

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malcook opened this issue Jan 6, 2022 · 1 comment

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@malcook
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malcook commented Jan 6, 2022

While comparing

http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2020/JASPAR2020_danRer11.bb
http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_danRer11.bb

I find that the 2022 bigbed files display the matrix identifiers while those for 2020 display the TF name, at least as displayed in IGV, as pictured below.

I expect this is in error.

image
image

@amathelier
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This is expected. We changed that since a TF can have multiple TF binding profiles in JASPAR. To avoid confusion about which profile is used, we now provide the profile name. Nevertheless, the bigbeds contain the TF name as an extra field.

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