diff --git a/tests/vegan-tests.R b/tests/vegan-tests.R index 530cc3f17..6140a7a89 100644 --- a/tests/vegan-tests.R +++ b/tests/vegan-tests.R @@ -42,7 +42,7 @@ anova(m, by="term", permutations=99) # failed before 2.5-0 anova(m, by="margin", permutations=99) # works since 2.5-0 anova(m, by="axis", permutations=99) ## adonis -adonis2(fla, data = dune.env) +adonis2(fla, data = dune.env, by = "terms") ## capscale p <- capscale(fla, data=df, na.action=na.exclude, subset = Use != "Pasture" & spno > 7) anova(p, permutations=99) @@ -80,10 +80,10 @@ foo("capscale", dune, Management, na.action = na.omit) # fails in 2.2-1 ## adonis must be done with detached 'df' or it will be used instead ## of with(dune.env, ...) detach(df) -with(dune.env, foo("adonis2", dune, Management)) +with(dune.env, foo("adonis2", dune, Management, by = "terms")) ## the test case reported in github issue #285 by @ktmbiome var <- "Moisture" -adonis2(dune ~ dune.env[, var]) +adonis2(dune ~ dune.env[, var], by = "terms") rm(var) ###